Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3152

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3151 and Rru_A3152 overlap by 4 nucleotidesRru_A3152 and Rru_A3153 are separated by 25 nucleotides Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894 _A3151 Rru_A3152: Rru_A3152 - hypothetical protein (NCBI), at 3,637,891 to 3,638,922 _A3152 Rru_A3153: Rru_A3153 - conserved virulence factor protein (NCBI), at 3,638,948 to 3,641,653 _A3153 Position (kb) 3637 3638 3639Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3637.029 kb on + strand, within Rru_A3151at 3637.030 kb on - strand, within Rru_A3151at 3637.030 kb on - strand, within Rru_A3151at 3637.030 kb on - strand, within Rru_A3151at 3637.136 kb on + strand, within Rru_A3151at 3637.137 kb on - strand, within Rru_A3151at 3637.158 kb on + strand, within Rru_A3151at 3637.159 kb on - strand, within Rru_A3151at 3637.159 kb on - strand, within Rru_A3151at 3637.303 kb on + strand, within Rru_A3151at 3637.684 kb on - strand, within Rru_A3151at 3637.763 kb on + strandat 3637.763 kb on + strandat 3637.763 kb on + strandat 3638.054 kb on + strand, within Rru_A3152at 3638.054 kb on + strand, within Rru_A3152at 3638.054 kb on + strand, within Rru_A3152at 3638.054 kb on + strand, within Rru_A3152at 3638.054 kb on + strand, within Rru_A3152at 3638.054 kb on + strand, within Rru_A3152at 3638.055 kb on - strand, within Rru_A3152at 3638.057 kb on + strand, within Rru_A3152at 3638.057 kb on + strand, within Rru_A3152at 3638.057 kb on + strand, within Rru_A3152at 3638.058 kb on - strand, within Rru_A3152at 3638.058 kb on - strand, within Rru_A3152at 3638.123 kb on + strand, within Rru_A3152at 3638.124 kb on - strand, within Rru_A3152at 3638.271 kb on - strand, within Rru_A3152at 3638.645 kb on + strand, within Rru_A3152at 3638.645 kb on + strand, within Rru_A3152at 3638.645 kb on + strand, within Rru_A3152at 3638.645 kb on + strand, within Rru_A3152at 3638.646 kb on - strand, within Rru_A3152at 3638.646 kb on - strand, within Rru_A3152at 3638.789 kb on + strand, within Rru_A3152at 3639.235 kb on - strand, within Rru_A3153at 3639.266 kb on - strand, within Rru_A3153at 3639.678 kb on + strand, within Rru_A3153at 3639.678 kb on + strand, within Rru_A3153

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
3,637,029 + Rru_A3151 0.57 -0.2
3,637,030 - Rru_A3151 0.57 -1.0
3,637,030 - Rru_A3151 0.57 +0.1
3,637,030 - Rru_A3151 0.57 -2.0
3,637,136 + Rru_A3151 0.62 -1.8
3,637,137 - Rru_A3151 0.62 -1.8
3,637,158 + Rru_A3151 0.63 +0.0
3,637,159 - Rru_A3151 0.63 +0.8
3,637,159 - Rru_A3151 0.63 -2.3
3,637,303 + Rru_A3151 0.70 -0.6
3,637,684 - Rru_A3151 0.89 +0.3
3,637,763 + +1.1
3,637,763 + +0.9
3,637,763 + -0.4
3,638,054 + Rru_A3152 0.16 +0.4
3,638,054 + Rru_A3152 0.16 -2.2
3,638,054 + Rru_A3152 0.16 -0.1
3,638,054 + Rru_A3152 0.16 -0.7
3,638,054 + Rru_A3152 0.16 +0.7
3,638,054 + Rru_A3152 0.16 -3.2
3,638,055 - Rru_A3152 0.16 +0.3
3,638,057 + Rru_A3152 0.16 -0.5
3,638,057 + Rru_A3152 0.16 -2.2
3,638,057 + Rru_A3152 0.16 +0.8
3,638,058 - Rru_A3152 0.16 +1.3
3,638,058 - Rru_A3152 0.16 -1.3
3,638,123 + Rru_A3152 0.22 +0.6
3,638,124 - Rru_A3152 0.23 +2.3
3,638,271 - Rru_A3152 0.37 +1.4
3,638,645 + Rru_A3152 0.73 +0.5
3,638,645 + Rru_A3152 0.73 -1.0
3,638,645 + Rru_A3152 0.73 -1.7
3,638,645 + Rru_A3152 0.73 -0.4
3,638,646 - Rru_A3152 0.73 -0.6
3,638,646 - Rru_A3152 0.73 -3.6
3,638,789 + Rru_A3152 0.87 -2.8
3,639,235 - Rru_A3153 0.11 -1.9
3,639,266 - Rru_A3153 0.12 -0.8
3,639,678 + Rru_A3153 0.27 +0.9
3,639,678 + Rru_A3153 0.27 -1.6

Or see this region's nucleotide sequence