Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3052

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3051 and Rru_A3052 are separated by 366 nucleotidesRru_A3052 and Rru_A3053 are separated by 107 nucleotides Rru_A3051: Rru_A3051 - Glycine cleavage system T protein (NCBI), at 3,514,107 to 3,515,234 _A3051 Rru_A3052: Rru_A3052 - hypothetical protein (NCBI), at 3,515,601 to 3,516,212 _A3052 Rru_A3053: Rru_A3053 - Homoserine kinase ThrB (NCBI), at 3,516,320 to 3,517,285 _A3053 Position (kb) 3515 3516 3517Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3514.836 kb on - strand, within Rru_A3051at 3514.949 kb on + strand, within Rru_A3051at 3514.949 kb on + strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.950 kb on - strand, within Rru_A3051at 3514.951 kb on + strand, within Rru_A3051at 3514.952 kb on - strand, within Rru_A3051at 3515.117 kb on - strand, within Rru_A3051at 3515.134 kb on + strandat 3515.249 kb on + strandat 3515.249 kb on + strandat 3515.249 kb on + strandat 3515.249 kb on + strandat 3515.249 kb on + strandat 3515.250 kb on - strandat 3515.250 kb on - strandat 3515.250 kb on - strandat 3515.409 kb on + strandat 3515.410 kb on - strandat 3515.524 kb on - strandat 3515.524 kb on - strandat 3515.534 kb on + strandat 3515.582 kb on + strandat 3515.632 kb on + strandat 3515.633 kb on - strandat 3515.669 kb on - strand, within Rru_A3052at 3515.669 kb on - strand, within Rru_A3052at 3515.782 kb on + strand, within Rru_A3052at 3515.782 kb on + strand, within Rru_A3052at 3515.782 kb on + strand, within Rru_A3052at 3515.782 kb on + strand, within Rru_A3052at 3515.782 kb on + strand, within Rru_A3052at 3515.783 kb on - strand, within Rru_A3052at 3515.783 kb on - strand, within Rru_A3052at 3515.783 kb on - strand, within Rru_A3052at 3515.923 kb on + strand, within Rru_A3052at 3515.923 kb on + strand, within Rru_A3052at 3515.923 kb on + strand, within Rru_A3052at 3516.206 kb on - strandat 3516.269 kb on + strandat 3516.269 kb on + strandat 3516.270 kb on - strandat 3516.270 kb on - strandat 3516.270 kb on - strandat 3516.270 kb on - strandat 3516.280 kb on + strandat 3516.280 kb on + strandat 3516.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,514,836 - Rru_A3051 0.65 +0.5
3,514,949 + Rru_A3051 0.75 -1.1
3,514,949 + Rru_A3051 0.75 +0.1
3,514,950 - Rru_A3051 0.75 +0.7
3,514,950 - Rru_A3051 0.75 +0.3
3,514,950 - Rru_A3051 0.75 +0.3
3,514,950 - Rru_A3051 0.75 -0.9
3,514,950 - Rru_A3051 0.75 +0.3
3,514,950 - Rru_A3051 0.75 -0.3
3,514,951 + Rru_A3051 0.75 +0.2
3,514,952 - Rru_A3051 0.75 -0.0
3,515,117 - Rru_A3051 0.90 -1.6
3,515,134 + +0.8
3,515,249 + +0.5
3,515,249 + -0.1
3,515,249 + +0.4
3,515,249 + -0.9
3,515,249 + -0.6
3,515,250 - -2.1
3,515,250 - -0.8
3,515,250 - +0.7
3,515,409 + +0.3
3,515,410 - +0.1
3,515,524 - -0.7
3,515,524 - +0.1
3,515,534 + +0.9
3,515,582 + +0.4
3,515,632 + -0.6
3,515,633 - +1.0
3,515,669 - Rru_A3052 0.11 -3.9
3,515,669 - Rru_A3052 0.11 -0.7
3,515,782 + Rru_A3052 0.30 -2.7
3,515,782 + Rru_A3052 0.30 -2.5
3,515,782 + Rru_A3052 0.30 +0.4
3,515,782 + Rru_A3052 0.30 -1.3
3,515,782 + Rru_A3052 0.30 +0.7
3,515,783 - Rru_A3052 0.30 -1.8
3,515,783 - Rru_A3052 0.30 -1.0
3,515,783 - Rru_A3052 0.30 +0.8
3,515,923 + Rru_A3052 0.53 -3.5
3,515,923 + Rru_A3052 0.53 +1.3
3,515,923 + Rru_A3052 0.53 -2.3
3,516,206 - +1.0
3,516,269 + -3.5
3,516,269 + -0.3
3,516,270 - -3.3
3,516,270 - -0.1
3,516,270 - -0.0
3,516,270 - -0.1
3,516,280 + -0.3
3,516,280 + -0.5
3,516,280 + +0.3

Or see this region's nucleotide sequence