Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2492

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2491 and Rru_A2492 are separated by 7 nucleotidesRru_A2492 and Rru_A2493 overlap by 4 nucleotides Rru_A2491: Rru_A2491 - Major facilitator superfamily MFS_1 (NCBI), at 2,896,793 to 2,898,010 _A2491 Rru_A2492: Rru_A2492 - Glycosyl transferase, group 1 (NCBI), at 2,898,018 to 2,899,133 _A2492 Rru_A2493: Rru_A2493 - Glycosyl transferase, group 1 (NCBI), at 2,899,130 to 2,900,191 _A2493 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2897.154 kb on - strand, within Rru_A2491at 2897.294 kb on + strand, within Rru_A2491at 2897.294 kb on + strand, within Rru_A2491at 2897.294 kb on + strand, within Rru_A2491at 2897.295 kb on - strand, within Rru_A2491at 2897.318 kb on + strand, within Rru_A2491at 2897.373 kb on - strand, within Rru_A2491at 2897.441 kb on + strand, within Rru_A2491at 2897.442 kb on - strand, within Rru_A2491at 2897.642 kb on + strand, within Rru_A2491at 2897.642 kb on + strand, within Rru_A2491at 2897.642 kb on + strand, within Rru_A2491at 2897.643 kb on - strand, within Rru_A2491at 2897.643 kb on - strand, within Rru_A2491at 2897.672 kb on + strand, within Rru_A2491at 2897.673 kb on - strand, within Rru_A2491at 2897.712 kb on - strand, within Rru_A2491at 2897.714 kb on - strand, within Rru_A2491at 2897.714 kb on - strand, within Rru_A2491at 2897.759 kb on + strand, within Rru_A2491at 2897.760 kb on - strand, within Rru_A2491at 2897.760 kb on - strand, within Rru_A2491at 2898.016 kb on + strandat 2898.019 kb on + strandat 2898.019 kb on + strandat 2898.019 kb on + strandat 2898.019 kb on + strandat 2898.020 kb on - strandat 2898.727 kb on + strand, within Rru_A2492at 2898.728 kb on - strand, within Rru_A2492at 2898.728 kb on - strand, within Rru_A2492at 2898.728 kb on - strand, within Rru_A2492at 2898.989 kb on - strand, within Rru_A2492at 2898.989 kb on - strand, within Rru_A2492at 2898.989 kb on - strand, within Rru_A2492at 2899.203 kb on + strandat 2899.203 kb on + strandat 2899.204 kb on - strandat 2899.204 kb on - strandat 2899.461 kb on + strand, within Rru_A2493at 2899.645 kb on - strand, within Rru_A2493at 2899.738 kb on + strand, within Rru_A2493at 2899.738 kb on + strand, within Rru_A2493at 2899.738 kb on + strand, within Rru_A2493at 2899.739 kb on - strand, within Rru_A2493

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,897,154 - Rru_A2491 0.30 +0.4
2,897,294 + Rru_A2491 0.41 +0.2
2,897,294 + Rru_A2491 0.41 +0.7
2,897,294 + Rru_A2491 0.41 +0.1
2,897,295 - Rru_A2491 0.41 +1.0
2,897,318 + Rru_A2491 0.43 -0.5
2,897,373 - Rru_A2491 0.48 +0.9
2,897,441 + Rru_A2491 0.53 +0.5
2,897,442 - Rru_A2491 0.53 -0.6
2,897,642 + Rru_A2491 0.70 +1.7
2,897,642 + Rru_A2491 0.70 -1.4
2,897,642 + Rru_A2491 0.70 -2.2
2,897,643 - Rru_A2491 0.70 -0.8
2,897,643 - Rru_A2491 0.70 -1.9
2,897,672 + Rru_A2491 0.72 -0.9
2,897,673 - Rru_A2491 0.72 -3.1
2,897,712 - Rru_A2491 0.75 -1.2
2,897,714 - Rru_A2491 0.76 -0.1
2,897,714 - Rru_A2491 0.76 -2.8
2,897,759 + Rru_A2491 0.79 +0.2
2,897,760 - Rru_A2491 0.79 +0.5
2,897,760 - Rru_A2491 0.79 -1.4
2,898,016 + +0.4
2,898,019 + -0.4
2,898,019 + -3.8
2,898,019 + +0.2
2,898,019 + -1.8
2,898,020 - -1.6
2,898,727 + Rru_A2492 0.64 -0.4
2,898,728 - Rru_A2492 0.64 +0.7
2,898,728 - Rru_A2492 0.64 -0.9
2,898,728 - Rru_A2492 0.64 -0.5
2,898,989 - Rru_A2492 0.87 -1.2
2,898,989 - Rru_A2492 0.87 -0.5
2,898,989 - Rru_A2492 0.87 -3.5
2,899,203 + -0.4
2,899,203 + +0.1
2,899,204 - +0.7
2,899,204 - +0.6
2,899,461 + Rru_A2493 0.31 -2.8
2,899,645 - Rru_A2493 0.48 +0.0
2,899,738 + Rru_A2493 0.57 +0.5
2,899,738 + Rru_A2493 0.57 -0.8
2,899,738 + Rru_A2493 0.57 -0.1
2,899,739 - Rru_A2493 0.57 +1.5

Or see this region's nucleotide sequence