Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2381 and Rru_A2382 are separated by 39 nucleotides Rru_A2382 and Rru_A2383 overlap by 4 nucleotides Rru_A2383 and Rru_A2384 overlap by 1 nucleotides
Rru_A2381: Rru_A2381 - lipocalin-like protein (NCBI), at 2,773,269 to 2,773,874
_A2381
Rru_A2382: Rru_A2382 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,773,914 to 2,774,696
_A2382
Rru_A2383: Rru_A2383 - ABC transporter component (NCBI), at 2,774,693 to 2,775,694
_A2383
Rru_A2384: Rru_A2384 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,775,694 to 2,776,872
_A2384
Position (kb)
2774
2775
2776 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2773.714 kb on + strand, within Rru_A2381 at 2773.715 kb on - strand, within Rru_A2381 at 2773.715 kb on - strand, within Rru_A2381 at 2773.715 kb on - strand, within Rru_A2381 at 2773.767 kb on - strand, within Rru_A2381 at 2774.560 kb on + strand, within Rru_A2382 at 2774.560 kb on + strand, within Rru_A2382 at 2774.560 kb on + strand, within Rru_A2382 at 2774.561 kb on - strand, within Rru_A2382 at 2774.561 kb on - strand, within Rru_A2382 at 2775.097 kb on + strand, within Rru_A2383 at 2775.098 kb on - strand, within Rru_A2383 at 2775.386 kb on + strand, within Rru_A2383 at 2775.387 kb on - strand, within Rru_A2383 at 2775.447 kb on + strand, within Rru_A2383 at 2775.447 kb on + strand, within Rru_A2383 at 2775.795 kb on + strand at 2775.795 kb on + strand at 2775.796 kb on - strand at 2776.057 kb on - strand, within Rru_A2384 at 2776.082 kb on + strand, within Rru_A2384 at 2776.082 kb on + strand, within Rru_A2384 at 2776.082 kb on + strand, within Rru_A2384 at 2776.082 kb on + strand, within Rru_A2384 at 2776.082 kb on + strand, within Rru_A2384 at 2776.083 kb on - strand, within Rru_A2384 at 2776.379 kb on + strand, within Rru_A2384 at 2776.379 kb on + strand, within Rru_A2384 at 2776.380 kb on - strand, within Rru_A2384 at 2776.380 kb on - strand, within Rru_A2384 at 2776.386 kb on + strand, within Rru_A2384 at 2776.387 kb on - strand, within Rru_A2384 at 2776.387 kb on - strand, within Rru_A2384 at 2776.568 kb on + strand, within Rru_A2384 at 2776.569 kb on - strand, within Rru_A2384
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,773,714 + Rru_A2381 0.73 +0.1 2,773,715 - Rru_A2381 0.74 -1.0 2,773,715 - Rru_A2381 0.74 -2.3 2,773,715 - Rru_A2381 0.74 +0.1 2,773,767 - Rru_A2381 0.82 +0.3 2,774,560 + Rru_A2382 0.83 +0.9 2,774,560 + Rru_A2382 0.83 +0.0 2,774,560 + Rru_A2382 0.83 -0.7 2,774,561 - Rru_A2382 0.83 -0.5 2,774,561 - Rru_A2382 0.83 -0.1 2,775,097 + Rru_A2383 0.40 -0.2 2,775,098 - Rru_A2383 0.40 -0.3 2,775,386 + Rru_A2383 0.69 +1.2 2,775,387 - Rru_A2383 0.69 +1.5 2,775,447 + Rru_A2383 0.75 -0.8 2,775,447 + Rru_A2383 0.75 +0.2 2,775,795 + +3.8 2,775,795 + -0.5 2,775,796 - +0.2 2,776,057 - Rru_A2384 0.31 -0.6 2,776,082 + Rru_A2384 0.33 +0.5 2,776,082 + Rru_A2384 0.33 +0.4 2,776,082 + Rru_A2384 0.33 +2.3 2,776,082 + Rru_A2384 0.33 +0.3 2,776,082 + Rru_A2384 0.33 -0.4 2,776,083 - Rru_A2384 0.33 -0.2 2,776,379 + Rru_A2384 0.58 +0.1 2,776,379 + Rru_A2384 0.58 -0.1 2,776,380 - Rru_A2384 0.58 +0.1 2,776,380 - Rru_A2384 0.58 +2.6 2,776,386 + Rru_A2384 0.59 +1.4 2,776,387 - Rru_A2384 0.59 -1.8 2,776,387 - Rru_A2384 0.59 -1.6 2,776,568 + Rru_A2384 0.74 -0.4 2,776,569 - Rru_A2384 0.74 -0.3
Or see this region's nucleotide sequence