Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2167

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2166 and Rru_A2167 are separated by 130 nucleotidesRru_A2167 and Rru_A2168 overlap by 4 nucleotidesRru_A2168 and Rru_A2169 are separated by 99 nucleotides Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128 _A2166 Rru_A2167: Rru_A2167 - Phosphoribosylformylglycinamidine cyclo-ligase (NCBI), at 2,516,259 to 2,517,425 _A2167 Rru_A2168: Rru_A2168 - Phosphoribosylglycinamide formyltransferase (NCBI), at 2,517,422 to 2,518,096 _A2168 Rru_A2169: Rru_A2169 - Nucleoside-diphosphate kinase (NCBI), at 2,518,196 to 2,518,618 _A2169 Position (kb) 2516 2517 2518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2515.312 kb on - strand, within Rru_A2166at 2515.312 kb on - strand, within Rru_A2166at 2515.312 kb on - strand, within Rru_A2166at 2515.341 kb on + strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.690 kb on + strand, within Rru_A2166at 2515.691 kb on - strand, within Rru_A2166at 2515.691 kb on - strand, within Rru_A2166at 2515.821 kb on + strand, within Rru_A2166at 2516.153 kb on - strandat 2516.155 kb on - strandat 2516.155 kb on - strandat 2516.155 kb on - strandat 2516.379 kb on + strand, within Rru_A2167at 2516.537 kb on + strand, within Rru_A2167at 2516.679 kb on + strand, within Rru_A2167at 2516.802 kb on + strand, within Rru_A2167at 2516.802 kb on + strand, within Rru_A2167at 2516.817 kb on + strand, within Rru_A2167at 2517.048 kb on + strand, within Rru_A2167at 2517.104 kb on + strand, within Rru_A2167at 2518.197 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,515,312 - Rru_A2166 0.39 -0.2
2,515,312 - Rru_A2166 0.39 +0.2
2,515,312 - Rru_A2166 0.39 -0.8
2,515,341 + Rru_A2166 0.41 +0.9
2,515,342 - Rru_A2166 0.41 -0.3
2,515,342 - Rru_A2166 0.41 -1.1
2,515,342 - Rru_A2166 0.41 -1.3
2,515,342 - Rru_A2166 0.41 -3.2
2,515,342 - Rru_A2166 0.41 +0.2
2,515,690 + Rru_A2166 0.67 -2.4
2,515,691 - Rru_A2166 0.67 -1.9
2,515,691 - Rru_A2166 0.67 +1.2
2,515,821 + Rru_A2166 0.77 -2.5
2,516,153 - -0.3
2,516,155 - -1.6
2,516,155 - -3.6
2,516,155 - -2.7
2,516,379 + Rru_A2167 0.10 +1.0
2,516,537 + Rru_A2167 0.24 -3.5
2,516,679 + Rru_A2167 0.36 -1.9
2,516,802 + Rru_A2167 0.47 -2.5
2,516,802 + Rru_A2167 0.47 -2.2
2,516,817 + Rru_A2167 0.48 -4.2
2,517,048 + Rru_A2167 0.68 -2.3
2,517,104 + Rru_A2167 0.72 -1.6
2,518,197 + -1.9

Or see this region's nucleotide sequence