Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1532 and Rru_A1533 are separated by 194 nucleotides Rru_A1533 and Rru_A1534 overlap by 10 nucleotides
Rru_A1532: Rru_A1532 - TPR repeat (NCBI), at 1,805,239 to 1,806,150
_A1532
Rru_A1533: Rru_A1533 - Pentapeptide repeat (NCBI), at 1,806,345 to 1,806,890
_A1533
Rru_A1534: Rru_A1534 - Cl- channel, voltage gated (NCBI), at 1,806,881 to 1,808,464
_A1534
Position (kb)
1806
1807 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1805.684 kb on + strand, within Rru_A1532 at 1805.684 kb on + strand, within Rru_A1532 at 1805.685 kb on - strand, within Rru_A1532 at 1805.787 kb on + strand, within Rru_A1532 at 1805.788 kb on - strand, within Rru_A1532 at 1806.213 kb on - strand at 1806.231 kb on - strand at 1806.234 kb on - strand at 1806.236 kb on + strand at 1806.368 kb on - strand at 1806.504 kb on + strand, within Rru_A1533 at 1806.504 kb on + strand, within Rru_A1533 at 1806.504 kb on + strand, within Rru_A1533 at 1806.504 kb on + strand, within Rru_A1533 at 1806.505 kb on - strand, within Rru_A1533 at 1806.505 kb on - strand, within Rru_A1533 at 1806.505 kb on - strand, within Rru_A1533 at 1806.505 kb on - strand, within Rru_A1533 at 1806.505 kb on - strand, within Rru_A1533 at 1806.751 kb on - strand, within Rru_A1533 at 1806.751 kb on - strand, within Rru_A1533 at 1806.778 kb on + strand, within Rru_A1533 at 1806.889 kb on - strand at 1807.038 kb on - strand at 1807.038 kb on - strand at 1807.055 kb on + strand, within Rru_A1534 at 1807.137 kb on - strand, within Rru_A1534 at 1807.137 kb on - strand, within Rru_A1534 at 1807.372 kb on + strand, within Rru_A1534 at 1807.696 kb on - strand, within Rru_A1534 at 1807.811 kb on + strand, within Rru_A1534 at 1807.811 kb on + strand, within Rru_A1534 at 1807.811 kb on + strand, within Rru_A1534 at 1807.812 kb on - strand, within Rru_A1534 at 1807.812 kb on - strand, within Rru_A1534 at 1807.812 kb on - strand, within Rru_A1534
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,805,684 + Rru_A1532 0.49 -0.3 1,805,684 + Rru_A1532 0.49 +0.9 1,805,685 - Rru_A1532 0.49 -0.5 1,805,787 + Rru_A1532 0.60 +0.4 1,805,788 - Rru_A1532 0.60 -0.2 1,806,213 - -2.2 1,806,231 - -0.0 1,806,234 - -0.1 1,806,236 + -2.8 1,806,368 - -0.0 1,806,504 + Rru_A1533 0.29 -0.9 1,806,504 + Rru_A1533 0.29 -2.1 1,806,504 + Rru_A1533 0.29 -0.8 1,806,504 + Rru_A1533 0.29 -2.2 1,806,505 - Rru_A1533 0.29 -0.2 1,806,505 - Rru_A1533 0.29 +0.6 1,806,505 - Rru_A1533 0.29 +1.4 1,806,505 - Rru_A1533 0.29 -3.4 1,806,505 - Rru_A1533 0.29 +0.3 1,806,751 - Rru_A1533 0.74 -0.4 1,806,751 - Rru_A1533 0.74 +0.4 1,806,778 + Rru_A1533 0.79 -4.8 1,806,889 - +0.4 1,807,038 - +0.6 1,807,038 - -2.8 1,807,055 + Rru_A1534 0.11 -1.2 1,807,137 - Rru_A1534 0.16 -1.7 1,807,137 - Rru_A1534 0.16 +0.3 1,807,372 + Rru_A1534 0.31 -0.2 1,807,696 - Rru_A1534 0.51 +0.0 1,807,811 + Rru_A1534 0.59 +0.6 1,807,811 + Rru_A1534 0.59 +0.3 1,807,811 + Rru_A1534 0.59 +0.4 1,807,812 - Rru_A1534 0.59 +0.8 1,807,812 - Rru_A1534 0.59 +0.7 1,807,812 - Rru_A1534 0.59 +0.3
Or see this region's nucleotide sequence