Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1533

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1532 and Rru_A1533 are separated by 194 nucleotidesRru_A1533 and Rru_A1534 overlap by 10 nucleotides Rru_A1532: Rru_A1532 - TPR repeat (NCBI), at 1,805,239 to 1,806,150 _A1532 Rru_A1533: Rru_A1533 - Pentapeptide repeat (NCBI), at 1,806,345 to 1,806,890 _A1533 Rru_A1534: Rru_A1534 - Cl- channel, voltage gated (NCBI), at 1,806,881 to 1,808,464 _A1534 Position (kb) 1806 1807Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1805.684 kb on + strand, within Rru_A1532at 1805.684 kb on + strand, within Rru_A1532at 1805.685 kb on - strand, within Rru_A1532at 1805.787 kb on + strand, within Rru_A1532at 1805.788 kb on - strand, within Rru_A1532at 1806.213 kb on - strandat 1806.231 kb on - strandat 1806.234 kb on - strandat 1806.236 kb on + strandat 1806.368 kb on - strandat 1806.504 kb on + strand, within Rru_A1533at 1806.504 kb on + strand, within Rru_A1533at 1806.504 kb on + strand, within Rru_A1533at 1806.504 kb on + strand, within Rru_A1533at 1806.505 kb on - strand, within Rru_A1533at 1806.505 kb on - strand, within Rru_A1533at 1806.505 kb on - strand, within Rru_A1533at 1806.505 kb on - strand, within Rru_A1533at 1806.505 kb on - strand, within Rru_A1533at 1806.751 kb on - strand, within Rru_A1533at 1806.751 kb on - strand, within Rru_A1533at 1806.778 kb on + strand, within Rru_A1533at 1806.889 kb on - strandat 1807.038 kb on - strandat 1807.038 kb on - strandat 1807.055 kb on + strand, within Rru_A1534at 1807.137 kb on - strand, within Rru_A1534at 1807.137 kb on - strand, within Rru_A1534at 1807.372 kb on + strand, within Rru_A1534at 1807.696 kb on - strand, within Rru_A1534at 1807.811 kb on + strand, within Rru_A1534at 1807.811 kb on + strand, within Rru_A1534at 1807.811 kb on + strand, within Rru_A1534at 1807.812 kb on - strand, within Rru_A1534at 1807.812 kb on - strand, within Rru_A1534at 1807.812 kb on - strand, within Rru_A1534

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,805,684 + Rru_A1532 0.49 -0.3
1,805,684 + Rru_A1532 0.49 +0.9
1,805,685 - Rru_A1532 0.49 -0.5
1,805,787 + Rru_A1532 0.60 +0.4
1,805,788 - Rru_A1532 0.60 -0.2
1,806,213 - -2.2
1,806,231 - -0.0
1,806,234 - -0.1
1,806,236 + -2.8
1,806,368 - -0.0
1,806,504 + Rru_A1533 0.29 -0.9
1,806,504 + Rru_A1533 0.29 -2.1
1,806,504 + Rru_A1533 0.29 -0.8
1,806,504 + Rru_A1533 0.29 -2.2
1,806,505 - Rru_A1533 0.29 -0.2
1,806,505 - Rru_A1533 0.29 +0.6
1,806,505 - Rru_A1533 0.29 +1.4
1,806,505 - Rru_A1533 0.29 -3.4
1,806,505 - Rru_A1533 0.29 +0.3
1,806,751 - Rru_A1533 0.74 -0.4
1,806,751 - Rru_A1533 0.74 +0.4
1,806,778 + Rru_A1533 0.79 -4.8
1,806,889 - +0.4
1,807,038 - +0.6
1,807,038 - -2.8
1,807,055 + Rru_A1534 0.11 -1.2
1,807,137 - Rru_A1534 0.16 -1.7
1,807,137 - Rru_A1534 0.16 +0.3
1,807,372 + Rru_A1534 0.31 -0.2
1,807,696 - Rru_A1534 0.51 +0.0
1,807,811 + Rru_A1534 0.59 +0.6
1,807,811 + Rru_A1534 0.59 +0.3
1,807,811 + Rru_A1534 0.59 +0.4
1,807,812 - Rru_A1534 0.59 +0.8
1,807,812 - Rru_A1534 0.59 +0.7
1,807,812 - Rru_A1534 0.59 +0.3

Or see this region's nucleotide sequence