Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1509

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1508 and Rru_A1509 are separated by 15 nucleotidesRru_A1509 and Rru_A1510 are separated by 176 nucleotidesRru_A1510 and Rru_A1511 are separated by 7 nucleotides Rru_A1508: Rru_A1508 - FAD dependent oxidoreductase (NCBI), at 1,781,723 to 1,783,369 _A1508 Rru_A1509: Rru_A1509 - hypothetical protein (NCBI), at 1,783,385 to 1,783,843 _A1509 Rru_A1510: Rru_A1510 - PRC-barrel (NCBI), at 1,784,020 to 1,784,673 _A1510 Rru_A1511: Rru_A1511 - Glycosyl transferase, family 2 (NCBI), at 1,784,681 to 1,785,760 _A1511 Position (kb) 1783 1784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1782.523 kb on + strand, within Rru_A1508at 1782.524 kb on - strand, within Rru_A1508at 1782.524 kb on - strand, within Rru_A1508at 1782.695 kb on + strand, within Rru_A1508at 1782.695 kb on + strand, within Rru_A1508at 1782.887 kb on + strand, within Rru_A1508at 1782.887 kb on + strand, within Rru_A1508at 1783.074 kb on - strand, within Rru_A1508at 1783.169 kb on + strand, within Rru_A1508at 1783.169 kb on + strand, within Rru_A1508at 1783.367 kb on + strandat 1783.368 kb on - strandat 1783.450 kb on + strand, within Rru_A1509at 1783.828 kb on + strandat 1783.828 kb on + strandat 1783.829 kb on - strandat 1783.829 kb on - strandat 1783.848 kb on + strandat 1784.142 kb on + strand, within Rru_A1510at 1784.143 kb on - strand, within Rru_A1510at 1784.229 kb on + strand, within Rru_A1510at 1784.229 kb on + strand, within Rru_A1510at 1784.229 kb on + strand, within Rru_A1510at 1784.229 kb on + strand, within Rru_A1510at 1784.230 kb on - strand, within Rru_A1510at 1784.230 kb on - strand, within Rru_A1510at 1784.230 kb on - strand, within Rru_A1510at 1784.230 kb on - strand, within Rru_A1510at 1784.269 kb on + strand, within Rru_A1510at 1784.523 kb on + strand, within Rru_A1510at 1784.524 kb on - strand, within Rru_A1510at 1784.524 kb on - strand, within Rru_A1510at 1784.619 kb on + strandat 1784.671 kb on + strandat 1784.671 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.680 kb on + strandat 1784.681 kb on - strandat 1784.681 kb on - strandat 1784.681 kb on - strandat 1784.681 kb on - strandat 1784.741 kb on + strandat 1784.741 kb on + strandat 1784.741 kb on + strandat 1784.741 kb on + strandat 1784.742 kb on - strandat 1784.742 kb on - strandat 1784.742 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
1,782,523 + Rru_A1508 0.49 -2.3
1,782,524 - Rru_A1508 0.49 -1.7
1,782,524 - Rru_A1508 0.49 +0.6
1,782,695 + Rru_A1508 0.59 -0.1
1,782,695 + Rru_A1508 0.59 +1.1
1,782,887 + Rru_A1508 0.71 -0.5
1,782,887 + Rru_A1508 0.71 -0.7
1,783,074 - Rru_A1508 0.82 +0.5
1,783,169 + Rru_A1508 0.88 +0.5
1,783,169 + Rru_A1508 0.88 -1.2
1,783,367 + +0.5
1,783,368 - +0.3
1,783,450 + Rru_A1509 0.14 -3.5
1,783,828 + -1.5
1,783,828 + -2.3
1,783,829 - -1.8
1,783,829 - +0.0
1,783,848 + -0.5
1,784,142 + Rru_A1510 0.19 -3.0
1,784,143 - Rru_A1510 0.19 +1.6
1,784,229 + Rru_A1510 0.32 +0.1
1,784,229 + Rru_A1510 0.32 +0.4
1,784,229 + Rru_A1510 0.32 +1.8
1,784,229 + Rru_A1510 0.32 +0.1
1,784,230 - Rru_A1510 0.32 +0.0
1,784,230 - Rru_A1510 0.32 -1.1
1,784,230 - Rru_A1510 0.32 +0.9
1,784,230 - Rru_A1510 0.32 +2.4
1,784,269 + Rru_A1510 0.38 -0.5
1,784,523 + Rru_A1510 0.77 -0.3
1,784,524 - Rru_A1510 0.77 +0.3
1,784,524 - Rru_A1510 0.77 -0.6
1,784,619 + -1.0
1,784,671 + +1.1
1,784,671 + -0.1
1,784,680 + -0.8
1,784,680 + +0.1
1,784,680 + -0.1
1,784,680 + +0.2
1,784,680 + -3.5
1,784,680 + +2.3
1,784,680 + +0.3
1,784,681 - +0.8
1,784,681 - -0.6
1,784,681 - +0.1
1,784,681 - +0.6
1,784,741 + -1.7
1,784,741 + -0.3
1,784,741 + +0.0
1,784,741 + +2.2
1,784,742 - -1.3
1,784,742 - -3.2
1,784,742 - +0.0

Or see this region's nucleotide sequence