Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1441

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1440 and Rru_A1441 are separated by 96 nucleotidesRru_A1441 and Rru_A1442 are separated by 71 nucleotidesRru_A1442 and Rru_A1443 overlap by 6 nucleotides Rru_A1440: Rru_A1440 - TonB-dependent siderophore receptor (NCBI), at 1,702,830 to 1,705,313 _A1440 Rru_A1441: Rru_A1441 - Transcriptional Regulator, MarR family (NCBI), at 1,705,410 to 1,705,853 _A1441 Rru_A1442: Rru_A1442 - lipoprotein, putative (NCBI), at 1,705,925 to 1,706,404 _A1442 Rru_A1443: Rru_A1443 - hypothetical protein (NCBI), at 1,706,399 to 1,707,355 _A1443 Position (kb) 1705 1706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1704.462 kb on + strand, within Rru_A1440at 1704.462 kb on + strand, within Rru_A1440at 1704.462 kb on + strand, within Rru_A1440at 1704.463 kb on - strand, within Rru_A1440at 1704.464 kb on + strand, within Rru_A1440at 1704.465 kb on - strand, within Rru_A1440at 1704.465 kb on - strand, within Rru_A1440at 1704.465 kb on - strand, within Rru_A1440at 1704.496 kb on + strand, within Rru_A1440at 1704.497 kb on - strand, within Rru_A1440at 1704.497 kb on - strand, within Rru_A1440at 1704.624 kb on + strand, within Rru_A1440at 1704.651 kb on + strand, within Rru_A1440at 1704.651 kb on + strand, within Rru_A1440at 1704.660 kb on + strand, within Rru_A1440at 1704.661 kb on - strand, within Rru_A1440at 1704.661 kb on - strand, within Rru_A1440at 1704.708 kb on + strand, within Rru_A1440at 1704.736 kb on - strand, within Rru_A1440at 1704.762 kb on + strand, within Rru_A1440at 1704.763 kb on - strand, within Rru_A1440at 1704.763 kb on - strand, within Rru_A1440at 1704.864 kb on + strand, within Rru_A1440at 1704.864 kb on + strand, within Rru_A1440at 1704.864 kb on + strand, within Rru_A1440at 1704.864 kb on + strand, within Rru_A1440at 1704.865 kb on - strand, within Rru_A1440at 1704.865 kb on - strand, within Rru_A1440at 1704.867 kb on - strand, within Rru_A1440at 1704.867 kb on - strand, within Rru_A1440at 1705.035 kb on + strand, within Rru_A1440at 1705.036 kb on - strand, within Rru_A1440at 1705.101 kb on + strandat 1705.101 kb on + strandat 1705.101 kb on + strandat 1705.101 kb on + strandat 1705.101 kb on + strandat 1705.102 kb on - strandat 1705.102 kb on - strandat 1705.102 kb on - strandat 1705.109 kb on + strandat 1705.110 kb on - strandat 1705.208 kb on + strandat 1705.218 kb on - strandat 1705.218 kb on - strandat 1705.237 kb on - strandat 1705.237 kb on - strandat 1705.239 kb on + strandat 1705.239 kb on + strandat 1705.240 kb on - strandat 1705.240 kb on - strandat 1705.263 kb on + strandat 1705.311 kb on + strandat 1705.311 kb on + strandat 1705.311 kb on + strandat 1705.312 kb on - strandat 1705.312 kb on - strandat 1705.400 kb on + strandat 1705.400 kb on + strandat 1705.401 kb on - strandat 1705.401 kb on - strandat 1705.401 kb on - strandat 1705.401 kb on - strandat 1705.491 kb on - strand, within Rru_A1441at 1705.744 kb on + strand, within Rru_A1441at 1705.744 kb on + strand, within Rru_A1441at 1705.820 kb on + strandat 1705.821 kb on - strandat 1705.822 kb on + strandat 1705.823 kb on - strandat 1705.823 kb on - strandat 1705.823 kb on - strandat 1705.823 kb on - strandat 1706.091 kb on + strand, within Rru_A1442at 1706.091 kb on + strand, within Rru_A1442at 1706.091 kb on + strand, within Rru_A1442at 1706.092 kb on - strand, within Rru_A1442at 1706.092 kb on - strand, within Rru_A1442at 1706.271 kb on - strand, within Rru_A1442at 1706.422 kb on + strandat 1706.567 kb on - strand, within Rru_A1443at 1706.604 kb on + strand, within Rru_A1443at 1706.605 kb on - strand, within Rru_A1443at 1706.605 kb on - strand, within Rru_A1443at 1706.700 kb on + strand, within Rru_A1443at 1706.707 kb on + strand, within Rru_A1443at 1706.724 kb on + strand, within Rru_A1443at 1706.775 kb on + strand, within Rru_A1443at 1706.776 kb on - strand, within Rru_A1443

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,704,462 + Rru_A1440 0.66 -0.3
1,704,462 + Rru_A1440 0.66 +1.0
1,704,462 + Rru_A1440 0.66 +1.0
1,704,463 - Rru_A1440 0.66 -1.9
1,704,464 + Rru_A1440 0.66 -0.8
1,704,465 - Rru_A1440 0.66 +0.2
1,704,465 - Rru_A1440 0.66 +0.8
1,704,465 - Rru_A1440 0.66 +0.1
1,704,496 + Rru_A1440 0.67 +0.1
1,704,497 - Rru_A1440 0.67 +0.3
1,704,497 - Rru_A1440 0.67 -1.2
1,704,624 + Rru_A1440 0.72 +0.1
1,704,651 + Rru_A1440 0.73 -0.9
1,704,651 + Rru_A1440 0.73 +0.5
1,704,660 + Rru_A1440 0.74 +0.4
1,704,661 - Rru_A1440 0.74 +1.6
1,704,661 - Rru_A1440 0.74 -0.6
1,704,708 + Rru_A1440 0.76 +0.3
1,704,736 - Rru_A1440 0.77 -0.1
1,704,762 + Rru_A1440 0.78 -2.6
1,704,763 - Rru_A1440 0.78 -0.7
1,704,763 - Rru_A1440 0.78 +0.1
1,704,864 + Rru_A1440 0.82 +0.1
1,704,864 + Rru_A1440 0.82 -0.1
1,704,864 + Rru_A1440 0.82 +1.3
1,704,864 + Rru_A1440 0.82 +0.7
1,704,865 - Rru_A1440 0.82 -0.7
1,704,865 - Rru_A1440 0.82 -0.4
1,704,867 - Rru_A1440 0.82 -0.9
1,704,867 - Rru_A1440 0.82 -1.2
1,705,035 + Rru_A1440 0.89 -1.5
1,705,036 - Rru_A1440 0.89 -2.4
1,705,101 + -0.6
1,705,101 + -0.4
1,705,101 + +0.4
1,705,101 + -2.4
1,705,101 + +0.4
1,705,102 - -3.1
1,705,102 - -0.6
1,705,102 - -1.6
1,705,109 + +0.3
1,705,110 - -0.6
1,705,208 + -0.7
1,705,218 - -0.4
1,705,218 - -0.9
1,705,237 - +0.4
1,705,237 - +0.4
1,705,239 + -0.1
1,705,239 + +0.6
1,705,240 - +0.3
1,705,240 - -1.0
1,705,263 + -1.2
1,705,311 + +1.4
1,705,311 + +1.1
1,705,311 + +1.2
1,705,312 - -0.2
1,705,312 - -1.1
1,705,400 + -0.7
1,705,400 + +1.5
1,705,401 - -0.7
1,705,401 - +0.2
1,705,401 - +0.6
1,705,401 - -0.0
1,705,491 - Rru_A1441 0.18 +1.8
1,705,744 + Rru_A1441 0.75 -1.4
1,705,744 + Rru_A1441 0.75 +0.4
1,705,820 + -3.0
1,705,821 - -0.3
1,705,822 + +0.0
1,705,823 - +0.6
1,705,823 - -0.2
1,705,823 - +0.7
1,705,823 - -1.0
1,706,091 + Rru_A1442 0.35 -2.2
1,706,091 + Rru_A1442 0.35 +0.6
1,706,091 + Rru_A1442 0.35 +0.5
1,706,092 - Rru_A1442 0.35 -0.1
1,706,092 - Rru_A1442 0.35 -0.3
1,706,271 - Rru_A1442 0.72 +0.4
1,706,422 + -0.6
1,706,567 - Rru_A1443 0.18 +0.4
1,706,604 + Rru_A1443 0.21 +0.2
1,706,605 - Rru_A1443 0.22 +1.0
1,706,605 - Rru_A1443 0.22 -1.3
1,706,700 + Rru_A1443 0.31 -0.7
1,706,707 + Rru_A1443 0.32 +0.3
1,706,724 + Rru_A1443 0.34 -2.4
1,706,775 + Rru_A1443 0.39 +0.5
1,706,776 - Rru_A1443 0.39 +0.6

Or see this region's nucleotide sequence