Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1147

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1146 and Rru_A1147 overlap by 4 nucleotidesRru_A1147 and Rru_A1148 are separated by 82 nucleotides Rru_A1146: Rru_A1146 - 5-aminolevulinic acid synthase (NCBI), at 1,352,865 to 1,354,130 _A1146 Rru_A1147: Rru_A1147 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 1,354,127 to 1,355,311 _A1147 Rru_A1148: Rru_A1148 - hypothetical protein (NCBI), at 1,355,394 to 1,357,784 _A1148 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1353.210 kb on + strand, within Rru_A1146at 1353.426 kb on + strand, within Rru_A1146at 1353.426 kb on + strand, within Rru_A1146at 1353.426 kb on + strand, within Rru_A1146at 1353.426 kb on + strand, within Rru_A1146at 1353.498 kb on + strand, within Rru_A1146at 1353.499 kb on - strand, within Rru_A1146at 1353.499 kb on - strand, within Rru_A1146at 1353.499 kb on - strand, within Rru_A1146at 1353.528 kb on + strand, within Rru_A1146at 1353.631 kb on - strand, within Rru_A1146at 1353.851 kb on + strand, within Rru_A1146at 1353.851 kb on + strand, within Rru_A1146at 1353.852 kb on - strand, within Rru_A1146at 1353.927 kb on + strand, within Rru_A1146at 1353.927 kb on + strand, within Rru_A1146at 1353.927 kb on + strand, within Rru_A1146at 1353.927 kb on + strand, within Rru_A1146at 1353.927 kb on + strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1353.928 kb on - strand, within Rru_A1146at 1354.001 kb on + strand, within Rru_A1146at 1354.123 kb on + strandat 1354.123 kb on + strandat 1354.123 kb on + strandat 1354.123 kb on + strandat 1354.123 kb on + strandat 1354.124 kb on - strandat 1354.124 kb on - strandat 1354.124 kb on - strandat 1354.124 kb on - strandat 1354.124 kb on - strandat 1354.124 kb on - strandat 1354.332 kb on - strand, within Rru_A1147at 1354.560 kb on - strand, within Rru_A1147at 1354.560 kb on - strand, within Rru_A1147at 1355.208 kb on + strandat 1355.309 kb on + strandat 1355.319 kb on + strandat 1355.320 kb on - strandat 1355.370 kb on - strandat 1355.522 kb on - strandat 1355.541 kb on - strandat 1355.541 kb on - strandat 1355.554 kb on + strandat 1355.554 kb on + strandat 1355.554 kb on + strandat 1355.554 kb on + strandat 1355.554 kb on + strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.555 kb on - strandat 1355.885 kb on + strand, within Rru_A1148at 1355.886 kb on - strand, within Rru_A1148at 1356.139 kb on + strand, within Rru_A1148at 1356.140 kb on - strand, within Rru_A1148at 1356.140 kb on - strand, within Rru_A1148at 1356.140 kb on - strand, within Rru_A1148at 1356.182 kb on + strand, within Rru_A1148at 1356.182 kb on + strand, within Rru_A1148at 1356.185 kb on - strand, within Rru_A1148at 1356.185 kb on - strand, within Rru_A1148at 1356.220 kb on + strand, within Rru_A1148at 1356.220 kb on + strand, within Rru_A1148at 1356.220 kb on + strand, within Rru_A1148at 1356.220 kb on + strand, within Rru_A1148at 1356.221 kb on - strand, within Rru_A1148at 1356.221 kb on - strand, within Rru_A1148at 1356.221 kb on - strand, within Rru_A1148

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,353,210 + Rru_A1146 0.27 -2.2
1,353,426 + Rru_A1146 0.44 +0.7
1,353,426 + Rru_A1146 0.44 -0.4
1,353,426 + Rru_A1146 0.44 -0.8
1,353,426 + Rru_A1146 0.44 +0.1
1,353,498 + Rru_A1146 0.50 -0.6
1,353,499 - Rru_A1146 0.50 +0.1
1,353,499 - Rru_A1146 0.50 -0.7
1,353,499 - Rru_A1146 0.50 -1.8
1,353,528 + Rru_A1146 0.52 -0.3
1,353,631 - Rru_A1146 0.61 +0.7
1,353,851 + Rru_A1146 0.78 +0.2
1,353,851 + Rru_A1146 0.78 -3.3
1,353,852 - Rru_A1146 0.78 -0.4
1,353,927 + Rru_A1146 0.84 -0.4
1,353,927 + Rru_A1146 0.84 +1.6
1,353,927 + Rru_A1146 0.84 -0.0
1,353,927 + Rru_A1146 0.84 -3.6
1,353,927 + Rru_A1146 0.84 -0.4
1,353,928 - Rru_A1146 0.84 +0.3
1,353,928 - Rru_A1146 0.84 +0.6
1,353,928 - Rru_A1146 0.84 -0.5
1,353,928 - Rru_A1146 0.84 -0.3
1,353,928 - Rru_A1146 0.84 -0.7
1,353,928 - Rru_A1146 0.84 +0.3
1,353,928 - Rru_A1146 0.84 -1.8
1,353,928 - Rru_A1146 0.84 -0.1
1,353,928 - Rru_A1146 0.84 -0.6
1,354,001 + Rru_A1146 0.90 -0.4
1,354,123 + -0.1
1,354,123 + -2.6
1,354,123 + -1.4
1,354,123 + -0.8
1,354,123 + -0.3
1,354,124 - -1.3
1,354,124 - +0.6
1,354,124 - +0.9
1,354,124 - -0.2
1,354,124 - -0.0
1,354,124 - -1.7
1,354,332 - Rru_A1147 0.17 +0.1
1,354,560 - Rru_A1147 0.37 +0.1
1,354,560 - Rru_A1147 0.37 +0.9
1,355,208 + -1.1
1,355,309 + +2.0
1,355,319 + +0.0
1,355,320 - +1.4
1,355,370 - +0.5
1,355,522 - +0.5
1,355,541 - -1.0
1,355,541 - +0.9
1,355,554 + +2.5
1,355,554 + -0.1
1,355,554 + -0.4
1,355,554 + -0.5
1,355,554 + -0.0
1,355,555 - -0.0
1,355,555 - +0.3
1,355,555 - -1.3
1,355,555 - +0.3
1,355,555 - -0.7
1,355,555 - +0.1
1,355,555 - +0.4
1,355,885 + Rru_A1148 0.21 +0.8
1,355,886 - Rru_A1148 0.21 -0.3
1,356,139 + Rru_A1148 0.31 +1.8
1,356,140 - Rru_A1148 0.31 +0.2
1,356,140 - Rru_A1148 0.31 -3.3
1,356,140 - Rru_A1148 0.31 +0.1
1,356,182 + Rru_A1148 0.33 +0.3
1,356,182 + Rru_A1148 0.33 +1.4
1,356,185 - Rru_A1148 0.33 -0.2
1,356,185 - Rru_A1148 0.33 -2.3
1,356,220 + Rru_A1148 0.35 +0.8
1,356,220 + Rru_A1148 0.35 -4.8
1,356,220 + Rru_A1148 0.35 -2.9
1,356,220 + Rru_A1148 0.35 +0.3
1,356,221 - Rru_A1148 0.35 -0.2
1,356,221 - Rru_A1148 0.35 -2.8
1,356,221 - Rru_A1148 0.35 +0.3

Or see this region's nucleotide sequence