Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0775

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0774 and Rru_A0775 are separated by 260 nucleotidesRru_A0775 and Rru_A0776 overlap by 4 nucleotides Rru_A0774: Rru_A0774 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 924,918 to 926,234 _A0774 Rru_A0775: Rru_A0775 - 2OG-Fe(II) oxygenase (NCBI), at 926,495 to 927,526 _A0775 Rru_A0776: Rru_A0776 - Aspartate/tyrosine/aromatic aminotransferase (NCBI), at 927,523 to 928,698 _A0776 Position (kb) 926 927 928Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 925.585 kb on + strand, within Rru_A0774at 925.585 kb on + strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.656 kb on - strand, within Rru_A0774at 925.658 kb on + strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.757 kb on - strand, within Rru_A0774at 925.877 kb on - strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.901 kb on + strand, within Rru_A0774at 926.039 kb on + strand, within Rru_A0774at 926.041 kb on + strand, within Rru_A0774at 926.042 kb on - strand, within Rru_A0774at 926.104 kb on + strandat 926.104 kb on + strandat 926.104 kb on + strandat 926.104 kb on + strandat 926.105 kb on - strandat 926.435 kb on + strandat 926.621 kb on + strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.752 kb on + strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.895 kb on + strand, within Rru_A0776at 927.896 kb on - strand, within Rru_A0776at 928.126 kb on + strand, within Rru_A0776at 928.471 kb on + strand, within Rru_A0776at 928.472 kb on - strand, within Rru_A0776at 928.472 kb on - strand, within Rru_A0776

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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925,585 + Rru_A0774 0.51 -1.8
925,585 + Rru_A0774 0.51 +0.1
925,586 - Rru_A0774 0.51 -0.2
925,586 - Rru_A0774 0.51 +0.2
925,586 - Rru_A0774 0.51 -1.0
925,586 - Rru_A0774 0.51 -0.9
925,586 - Rru_A0774 0.51 -0.7
925,600 + Rru_A0774 0.52 +0.1
925,600 + Rru_A0774 0.52 +0.4
925,601 - Rru_A0774 0.52 +0.5
925,601 - Rru_A0774 0.52 +0.8
925,656 - Rru_A0774 0.56 +0.4
925,658 + Rru_A0774 0.56 -1.0
925,754 - Rru_A0774 0.63 +0.2
925,754 - Rru_A0774 0.63 -0.1
925,754 - Rru_A0774 0.63 +0.4
925,756 + Rru_A0774 0.64 -0.1
925,756 + Rru_A0774 0.64 +0.3
925,756 + Rru_A0774 0.64 -0.8
925,757 - Rru_A0774 0.64 -1.2
925,877 - Rru_A0774 0.73 -1.1
925,898 + Rru_A0774 0.74 -3.0
925,898 + Rru_A0774 0.74 -0.3
925,898 + Rru_A0774 0.74 -1.4
925,898 + Rru_A0774 0.74 +0.6
925,898 + Rru_A0774 0.74 +0.1
925,899 - Rru_A0774 0.74 +1.2
925,899 - Rru_A0774 0.74 +0.6
925,899 - Rru_A0774 0.74 +0.1
925,901 + Rru_A0774 0.75 -1.0
926,039 + Rru_A0774 0.85 -0.4
926,041 + Rru_A0774 0.85 -0.1
926,042 - Rru_A0774 0.85 -1.8
926,104 + -0.1
926,104 + -1.4
926,104 + -3.2
926,104 + +1.5
926,105 - -0.7
926,435 + -1.8
926,621 + Rru_A0775 0.12 -0.1
926,622 - Rru_A0775 0.12 +2.6
926,622 - Rru_A0775 0.12 +1.2
926,750 + Rru_A0775 0.25 -0.1
926,750 + Rru_A0775 0.25 -0.6
926,752 + Rru_A0775 0.25 -0.7
926,753 - Rru_A0775 0.25 -0.9
926,753 - Rru_A0775 0.25 -1.0
926,753 - Rru_A0775 0.25 -0.8
927,018 - Rru_A0775 0.51 -0.1
927,018 - Rru_A0775 0.51 -1.0
927,251 + Rru_A0775 0.73 -2.3
927,251 + Rru_A0775 0.73 +0.4
927,251 + Rru_A0775 0.73 +0.7
927,895 + Rru_A0776 0.32 -1.1
927,896 - Rru_A0776 0.32 -1.1
928,126 + Rru_A0776 0.51 +0.2
928,471 + Rru_A0776 0.81 +0.5
928,472 - Rru_A0776 0.81 +0.4
928,472 - Rru_A0776 0.81 +0.4

Or see this region's nucleotide sequence