Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0659

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0657 and Rru_A0658 are separated by 101 nucleotidesRru_A0658 and Rru_A0659 overlap by 58 nucleotidesRru_A0659 and Rru_A0660 overlap by 4 nucleotides Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094 _A0657 Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128 _A0658 Rru_A0659: Rru_A0659 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation (NCBI), at 781,071 to 783,371 _A0659 Rru_A0660: Rru_A0660 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 783,368 to 785,245 _A0660 Position (kb) 781 782 783 784Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 780.122 kb on - strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.136 kb on - strandat 780.136 kb on - strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.162 kb on + strandat 780.182 kb on + strandat 780.191 kb on + strandat 780.360 kb on + strand, within Rru_A0658at 780.361 kb on - strand, within Rru_A0658at 780.396 kb on + strand, within Rru_A0658at 780.397 kb on - strand, within Rru_A0658at 780.599 kb on - strand, within Rru_A0658at 780.736 kb on + strand, within Rru_A0658at 780.999 kb on + strand, within Rru_A0658at 781.000 kb on - strand, within Rru_A0658at 781.000 kb on - strand, within Rru_A0658at 781.091 kb on + strandat 781.091 kb on + strandat 781.092 kb on - strandat 781.195 kb on + strandat 781.195 kb on + strandat 781.196 kb on - strandat 781.196 kb on - strandat 781.196 kb on - strandat 781.325 kb on + strand, within Rru_A0659at 781.399 kb on + strand, within Rru_A0659at 781.400 kb on - strand, within Rru_A0659at 781.400 kb on - strand, within Rru_A0659at 781.414 kb on + strand, within Rru_A0659at 781.455 kb on - strand, within Rru_A0659at 781.491 kb on + strand, within Rru_A0659at 781.492 kb on - strand, within Rru_A0659at 781.709 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.931 kb on - strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.333 kb on - strand, within Rru_A0659at 782.546 kb on + strand, within Rru_A0659at 782.546 kb on + strand, within Rru_A0659at 782.547 kb on - strand, within Rru_A0659at 782.548 kb on + strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.911 kb on + strand, within Rru_A0659at 782.977 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.993 kb on - strand, within Rru_A0659at 782.993 kb on - strand, within Rru_A0659at 783.023 kb on - strand, within Rru_A0659at 783.170 kb on + strandat 783.171 kb on - strandat 783.191 kb on + strandat 783.192 kb on - strandat 783.194 kb on - strandat 783.194 kb on - strandat 783.217 kb on + strandat 783.218 kb on - strandat 783.449 kb on - strandat 783.519 kb on + strandat 783.519 kb on + strandat 783.520 kb on - strandat 783.568 kb on + strand, within Rru_A0660at 783.656 kb on + strand, within Rru_A0660at 783.656 kb on + strand, within Rru_A0660at 783.657 kb on - strand, within Rru_A0660at 783.657 kb on - strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.923 kb on - strand, within Rru_A0660at 784.263 kb on + strand, within Rru_A0660

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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780,122 - -2.7
780,135 + -1.9
780,135 + -3.5
780,135 + -1.2
780,135 + -0.3
780,135 + +0.3
780,135 + -0.6
780,136 - +1.2
780,136 - +0.1
780,158 + -0.4
780,158 + +0.9
780,158 + -0.4
780,162 + -0.2
780,182 + -1.4
780,191 + -0.1
780,360 + Rru_A0658 0.18 +0.8
780,361 - Rru_A0658 0.18 -1.8
780,396 + Rru_A0658 0.21 -1.8
780,397 - Rru_A0658 0.22 +0.3
780,599 - Rru_A0658 0.43 -0.9
780,736 + Rru_A0658 0.58 +1.2
780,999 + Rru_A0658 0.86 +0.1
781,000 - Rru_A0658 0.86 +0.3
781,000 - Rru_A0658 0.86 -0.6
781,091 + -0.4
781,091 + -1.0
781,092 - -1.0
781,195 + +0.3
781,195 + -0.2
781,196 - +0.5
781,196 - -2.4
781,196 - -2.1
781,325 + Rru_A0659 0.11 +0.7
781,399 + Rru_A0659 0.14 -0.4
781,400 - Rru_A0659 0.14 +0.5
781,400 - Rru_A0659 0.14 +0.2
781,414 + Rru_A0659 0.15 -0.3
781,455 - Rru_A0659 0.17 -0.2
781,491 + Rru_A0659 0.18 +0.3
781,492 - Rru_A0659 0.18 -0.2
781,709 + Rru_A0659 0.28 -1.9
781,930 + Rru_A0659 0.37 -0.2
781,930 + Rru_A0659 0.37 +2.1
781,930 + Rru_A0659 0.37 -3.6
781,930 + Rru_A0659 0.37 +0.9
781,931 - Rru_A0659 0.37 -2.7
782,332 + Rru_A0659 0.55 -0.3
782,332 + Rru_A0659 0.55 +0.5
782,332 + Rru_A0659 0.55 +0.4
782,333 - Rru_A0659 0.55 -1.2
782,546 + Rru_A0659 0.64 -0.8
782,546 + Rru_A0659 0.64 -0.3
782,547 - Rru_A0659 0.64 -1.9
782,548 + Rru_A0659 0.64 -1.1
782,549 - Rru_A0659 0.64 -1.0
782,549 - Rru_A0659 0.64 -0.4
782,549 - Rru_A0659 0.64 +0.4
782,549 - Rru_A0659 0.64 +1.0
782,549 - Rru_A0659 0.64 +1.3
782,549 - Rru_A0659 0.64 -1.2
782,911 + Rru_A0659 0.80 +0.2
782,977 + Rru_A0659 0.83 -1.6
782,992 + Rru_A0659 0.83 -0.3
782,992 + Rru_A0659 0.83 +2.3
782,992 + Rru_A0659 0.83 -0.9
782,993 - Rru_A0659 0.84 +0.7
782,993 - Rru_A0659 0.84 -0.4
783,023 - Rru_A0659 0.85 -2.2
783,170 + +0.7
783,171 - -2.0
783,191 + +0.4
783,192 - -2.2
783,194 - -3.3
783,194 - -0.8
783,217 + +0.1
783,218 - +0.3
783,449 - +0.9
783,519 + -0.9
783,519 + +0.3
783,520 - -3.5
783,568 + Rru_A0660 0.11 +0.3
783,656 + Rru_A0660 0.15 -3.5
783,656 + Rru_A0660 0.15 -0.4
783,657 - Rru_A0660 0.15 -1.6
783,657 - Rru_A0660 0.15 +1.8
783,922 + Rru_A0660 0.29 +2.2
783,922 + Rru_A0660 0.29 +0.4
783,922 + Rru_A0660 0.29 -4.3
783,923 - Rru_A0660 0.30 -1.4
784,263 + Rru_A0660 0.48 -0.5

Or see this region's nucleotide sequence