Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0542 and Rru_A0543 are separated by 12 nucleotides Rru_A0543 and Rru_A0544 are separated by 17 nucleotides Rru_A0544 and Rru_A0545 are separated by 60 nucleotides
Rru_A0542: Rru_A0542 - Surface presentation of antigens (SPOA) protein (NCBI), at 638,672 to 639,019
_A0542
Rru_A0543: Rru_A0543 - hypothetical protein (NCBI), at 639,032 to 639,766
_A0543
Rru_A0544: Rru_A0544 - Flagellar motor switch protein FliG (NCBI), at 639,784 to 640,803
_A0544
Rru_A0545: Rru_A0545 - Flagellar FliF M-ring protein (NCBI), at 640,864 to 642,519
_A0545
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.852 kb on - strand, within Rru_A0542 at 638.852 kb on - strand, within Rru_A0542 at 638.895 kb on + strand, within Rru_A0542 at 638.896 kb on - strand, within Rru_A0542 at 639.033 kb on + strand at 639.034 kb on - strand at 639.243 kb on + strand, within Rru_A0543 at 639.287 kb on - strand, within Rru_A0543 at 639.454 kb on + strand, within Rru_A0543 at 639.571 kb on + strand, within Rru_A0543 at 639.572 kb on - strand, within Rru_A0543 at 639.572 kb on - strand, within Rru_A0543 at 639.585 kb on + strand, within Rru_A0543 at 639.585 kb on + strand, within Rru_A0543 at 639.585 kb on + strand, within Rru_A0543 at 639.586 kb on - strand, within Rru_A0543 at 639.586 kb on - strand, within Rru_A0543 at 639.586 kb on - strand, within Rru_A0543 at 639.586 kb on - strand, within Rru_A0543 at 639.717 kb on + strand at 639.717 kb on + strand at 639.717 kb on + strand at 639.718 kb on - strand at 639.718 kb on - strand at 639.718 kb on - strand at 639.718 kb on - strand at 639.718 kb on - strand at 639.718 kb on - strand at 639.788 kb on + strand at 640.427 kb on + strand, within Rru_A0544 at 640.427 kb on + strand, within Rru_A0544 at 640.427 kb on + strand, within Rru_A0544 at 640.565 kb on + strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.749 kb on + strand at 640.749 kb on + strand at 640.749 kb on + strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.781 kb on + strand at 640.782 kb on - strand at 640.877 kb on + strand at 641.343 kb on - strand, within Rru_A0545 at 641.439 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.523 kb on - strand, within Rru_A0545 at 641.523 kb on - strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.722 kb on - strand, within Rru_A0545 at 641.722 kb on - strand, within Rru_A0545
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 638,852 - Rru_A0542 0.52 -0.1 638,852 - Rru_A0542 0.52 +2.2 638,895 + Rru_A0542 0.64 -0.1 638,896 - Rru_A0542 0.64 +0.3 639,033 + -3.7 639,034 - -1.0 639,243 + Rru_A0543 0.29 +1.2 639,287 - Rru_A0543 0.35 -0.5 639,454 + Rru_A0543 0.57 +1.9 639,571 + Rru_A0543 0.73 -3.4 639,572 - Rru_A0543 0.73 -2.6 639,572 - Rru_A0543 0.73 +2.3 639,585 + Rru_A0543 0.75 -0.4 639,585 + Rru_A0543 0.75 -0.7 639,585 + Rru_A0543 0.75 +1.1 639,586 - Rru_A0543 0.75 -0.4 639,586 - Rru_A0543 0.75 +0.3 639,586 - Rru_A0543 0.75 +0.8 639,586 - Rru_A0543 0.75 +0.3 639,717 + -0.9 639,717 + +0.6 639,717 + +0.5 639,718 - -0.3 639,718 - -0.9 639,718 - -1.2 639,718 - +0.3 639,718 - -3.6 639,718 - +0.3 639,788 + +0.1 640,427 + Rru_A0544 0.63 -0.1 640,427 + Rru_A0544 0.63 +1.3 640,427 + Rru_A0544 0.63 -2.2 640,565 + Rru_A0544 0.77 -2.8 640,566 - Rru_A0544 0.77 -0.1 640,566 - Rru_A0544 0.77 -0.6 640,566 - Rru_A0544 0.77 +0.4 640,566 - Rru_A0544 0.77 -2.4 640,566 - Rru_A0544 0.77 -1.7 640,749 + -0.1 640,749 + -1.6 640,749 + +1.2 640,750 - +0.6 640,750 - -1.6 640,750 - +2.0 640,750 - -0.1 640,750 - +1.3 640,750 - -0.4 640,750 - +0.3 640,750 - +0.0 640,750 - -0.3 640,781 + +0.6 640,782 - -0.0 640,877 + +1.4 641,343 - Rru_A0545 0.29 -0.4 641,439 + Rru_A0545 0.35 -2.1 641,522 + Rru_A0545 0.40 -2.3 641,522 + Rru_A0545 0.40 -0.4 641,522 + Rru_A0545 0.40 +0.1 641,523 - Rru_A0545 0.40 -2.1 641,523 - Rru_A0545 0.40 -2.4 641,721 + Rru_A0545 0.52 -0.0 641,721 + Rru_A0545 0.52 +1.4 641,721 + Rru_A0545 0.52 +0.4 641,722 - Rru_A0545 0.52 +0.6 641,722 - Rru_A0545 0.52 -1.5
Or see this region's nucleotide sequence