Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0525

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0523 and Rru_A0524 are separated by 4 nucleotidesRru_A0524 and Rru_A0525 are separated by 33 nucleotidesRru_A0525 and Rru_A0526 are separated by 243 nucleotides Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838 _A0523 Rru_A0524: Rru_A0524 - MCP methyltransferase, CheR-type (NCBI), at 618,843 to 619,685 _A0524 Rru_A0525: Rru_A0525 - Two component Transcriptional regulator, Winged helix family (NCBI), at 619,719 to 620,438 _A0525 Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109 _A0526 Position (kb) 619 620 621Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 618.809 kb on + strandat 618.809 kb on + strandat 618.810 kb on - strandat 618.810 kb on - strandat 618.888 kb on - strandat 618.888 kb on - strandat 618.921 kb on + strandat 618.921 kb on + strandat 618.922 kb on - strandat 618.922 kb on - strandat 619.115 kb on + strand, within Rru_A0524at 619.188 kb on + strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.302 kb on + strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.564 kb on - strand, within Rru_A0524at 619.635 kb on + strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.904 kb on - strand, within Rru_A0525at 619.975 kb on + strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.146 kb on + strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.305 kb on + strand, within Rru_A0525at 620.306 kb on - strand, within Rru_A0525at 620.503 kb on + strandat 620.570 kb on - strandat 620.579 kb on - strandat 620.662 kb on + strandat 620.662 kb on + strandat 620.967 kb on + strand, within Rru_A0526at 620.967 kb on + strand, within Rru_A0526at 620.967 kb on + strand, within Rru_A0526at 621.200 kb on + strand, within Rru_A0526at 621.390 kb on + strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.414 kb on + strand, within Rru_A0526at 621.414 kb on + strand, within Rru_A0526at 621.415 kb on - strand, within Rru_A0526

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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618,809 + -2.4
618,809 + -3.4
618,810 - -2.1
618,810 - -0.8
618,888 - +0.5
618,888 - -1.3
618,921 + +0.2
618,921 + -1.2
618,922 - -0.4
618,922 - +0.8
619,115 + Rru_A0524 0.32 -0.6
619,188 + Rru_A0524 0.41 -0.0
619,189 - Rru_A0524 0.41 -0.2
619,189 - Rru_A0524 0.41 -0.4
619,302 + Rru_A0524 0.54 -0.8
619,414 - Rru_A0524 0.68 +0.5
619,414 - Rru_A0524 0.68 +0.4
619,414 - Rru_A0524 0.68 -0.4
619,414 - Rru_A0524 0.68 +0.8
619,563 + Rru_A0524 0.85 +0.4
619,563 + Rru_A0524 0.85 -0.1
619,564 - Rru_A0524 0.86 -0.2
619,635 + -1.3
619,784 - +0.9
619,784 - +1.0
619,784 - -4.0
619,811 - Rru_A0525 0.13 -0.9
619,811 - Rru_A0525 0.13 -2.1
619,811 - Rru_A0525 0.13 -3.3
619,904 - Rru_A0525 0.26 -1.7
619,975 + Rru_A0525 0.36 -0.5
619,976 - Rru_A0525 0.36 -3.9
619,976 - Rru_A0525 0.36 -0.4
620,126 + Rru_A0525 0.57 -4.6
620,126 + Rru_A0525 0.57 +0.1
620,146 + Rru_A0525 0.59 -0.8
620,147 - Rru_A0525 0.59 -0.4
620,147 - Rru_A0525 0.59 -2.5
620,147 - Rru_A0525 0.59 -0.4
620,147 - Rru_A0525 0.59 +0.1
620,305 + Rru_A0525 0.81 -3.9
620,306 - Rru_A0525 0.82 -2.4
620,503 + -0.1
620,570 - +0.7
620,579 - -3.9
620,662 + +0.6
620,662 + -0.1
620,967 + Rru_A0526 0.20 -0.5
620,967 + Rru_A0526 0.20 -1.9
620,967 + Rru_A0526 0.20 -2.5
621,200 + Rru_A0526 0.36 -0.2
621,390 + Rru_A0526 0.50 -0.1
621,391 - Rru_A0526 0.50 +0.5
621,391 - Rru_A0526 0.50 +1.4
621,391 - Rru_A0526 0.50 -0.0
621,391 - Rru_A0526 0.50 +0.6
621,392 + Rru_A0526 0.50 -0.2
621,392 + Rru_A0526 0.50 -1.4
621,392 + Rru_A0526 0.50 +0.5
621,392 + Rru_A0526 0.50 -0.8
621,392 + Rru_A0526 0.50 -1.6
621,392 + Rru_A0526 0.50 +1.0
621,392 + Rru_A0526 0.50 +0.3
621,392 + Rru_A0526 0.50 +0.4
621,393 - Rru_A0526 0.50 -1.5
621,393 - Rru_A0526 0.50 -0.8
621,393 - Rru_A0526 0.50 -0.1
621,393 - Rru_A0526 0.50 +0.5
621,393 - Rru_A0526 0.50 +1.6
621,393 - Rru_A0526 0.50 +1.1
621,393 - Rru_A0526 0.50 -0.9
621,393 - Rru_A0526 0.50 -0.2
621,393 - Rru_A0526 0.50 +1.0
621,393 - Rru_A0526 0.50 -1.7
621,414 + Rru_A0526 0.51 -0.9
621,414 + Rru_A0526 0.51 -0.2
621,415 - Rru_A0526 0.51 +1.2

Or see this region's nucleotide sequence