Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0507

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0506 and Rru_A0507 overlap by 4 nucleotidesRru_A0507 and Rru_A0508 are separated by 106 nucleotides Rru_A0506: Rru_A0506 - Glycoside hydrolase (NCBI), at 597,429 to 599,249 _A0506 Rru_A0507: Rru_A0507 - Alpha amylase, catalytic region (NCBI), at 599,246 to 602,065 _A0507 Rru_A0508: Rru_A0508 - Aminotransferase, class IV (NCBI), at 602,172 to 603,056 _A0508 Position (kb) 599 600 601 602 603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 598.378 kb on - strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.401 kb on - strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.447 kb on - strand, within Rru_A0506at 598.449 kb on + strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.512 kb on + strand, within Rru_A0506at 598.513 kb on - strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 599.262 kb on - strandat 599.262 kb on - strandat 599.279 kb on + strandat 599.280 kb on - strandat 599.280 kb on - strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.366 kb on + strandat 599.411 kb on + strandat 599.411 kb on + strandat 599.412 kb on - strandat 599.412 kb on - strandat 599.554 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.684 kb on + strand, within Rru_A0507at 599.685 kb on - strand, within Rru_A0507at 599.792 kb on + strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.801 kb on - strand, within Rru_A0507at 600.111 kb on - strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.344 kb on + strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.701 kb on + strand, within Rru_A0507at 600.701 kb on + strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.800 kb on + strand, within Rru_A0507at 600.800 kb on + strand, within Rru_A0507at 600.801 kb on - strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.901 kb on + strand, within Rru_A0507at 600.901 kb on + strand, within Rru_A0507at 601.331 kb on + strand, within Rru_A0507at 601.331 kb on + strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.415 kb on + strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.525 kb on + strand, within Rru_A0507at 601.558 kb on + strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.934 kb on - strandat 602.063 kb on + strandat 602.064 kb on - strandat 602.104 kb on - strandat 602.174 kb on - strandat 602.203 kb on + strandat 602.228 kb on - strandat 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.628 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.750 kb on - strand, within Rru_A0508at 602.771 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 603.010 kb on + strandat 603.010 kb on + strandat 603.011 kb on - strandat 603.012 kb on + strandat 603.013 kb on - strandat 603.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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598,378 - Rru_A0506 0.52 -1.1
598,400 + Rru_A0506 0.53 +0.7
598,400 + Rru_A0506 0.53 -2.0
598,401 - Rru_A0506 0.53 -0.0
598,446 + Rru_A0506 0.56 -2.6
598,446 + Rru_A0506 0.56 +0.6
598,447 - Rru_A0506 0.56 -2.0
598,449 + Rru_A0506 0.56 +0.7
598,450 - Rru_A0506 0.56 -2.1
598,450 - Rru_A0506 0.56 -1.2
598,512 + Rru_A0506 0.59 -4.4
598,513 - Rru_A0506 0.60 +0.5
598,645 + Rru_A0506 0.67 -0.2
598,645 + Rru_A0506 0.67 -1.9
598,645 + Rru_A0506 0.67 +0.7
598,646 - Rru_A0506 0.67 +0.1
598,646 - Rru_A0506 0.67 -0.5
598,646 - Rru_A0506 0.67 +0.9
599,262 - +0.6
599,262 - -0.6
599,279 + +0.4
599,280 - -2.2
599,280 - +0.4
599,336 + +0.5
599,336 + -0.0
599,336 + -0.5
599,366 + +0.7
599,411 + +0.3
599,411 + -0.5
599,412 - +1.8
599,412 - +0.3
599,554 + Rru_A0507 0.11 +0.3
599,609 + Rru_A0507 0.13 -0.7
599,609 + Rru_A0507 0.13 -3.3
599,684 + Rru_A0507 0.16 +1.1
599,685 - Rru_A0507 0.16 -0.2
599,792 + Rru_A0507 0.19 +0.1
599,793 - Rru_A0507 0.19 -0.8
599,793 - Rru_A0507 0.19 +0.5
599,793 - Rru_A0507 0.19 +1.0
599,800 + Rru_A0507 0.20 +0.2
599,800 + Rru_A0507 0.20 +1.7
599,800 + Rru_A0507 0.20 +0.4
599,801 - Rru_A0507 0.20 -1.8
600,111 - Rru_A0507 0.31 -3.0
600,269 + Rru_A0507 0.36 -1.0
600,269 + Rru_A0507 0.36 +1.4
600,269 + Rru_A0507 0.36 -2.2
600,269 + Rru_A0507 0.36 +0.9
600,270 - Rru_A0507 0.36 +0.9
600,270 - Rru_A0507 0.36 -0.2
600,270 - Rru_A0507 0.36 -0.3
600,270 - Rru_A0507 0.36 +0.3
600,344 + Rru_A0507 0.39 -0.1
600,345 - Rru_A0507 0.39 +0.2
600,345 - Rru_A0507 0.39 +0.3
600,345 - Rru_A0507 0.39 +1.4
600,701 + Rru_A0507 0.52 +0.5
600,701 + Rru_A0507 0.52 +0.3
600,702 - Rru_A0507 0.52 +0.7
600,702 - Rru_A0507 0.52 +0.5
600,702 - Rru_A0507 0.52 +0.7
600,800 + Rru_A0507 0.55 -0.3
600,800 + Rru_A0507 0.55 +0.0
600,801 - Rru_A0507 0.55 -1.4
600,899 + Rru_A0507 0.59 +0.1
600,899 + Rru_A0507 0.59 -0.6
600,899 + Rru_A0507 0.59 +0.0
600,899 + Rru_A0507 0.59 -0.2
600,899 + Rru_A0507 0.59 -0.7
600,899 + Rru_A0507 0.59 -2.9
600,899 + Rru_A0507 0.59 +0.1
600,900 - Rru_A0507 0.59 -0.4
600,900 - Rru_A0507 0.59 -0.6
600,900 - Rru_A0507 0.59 +0.5
600,900 - Rru_A0507 0.59 +0.6
600,901 + Rru_A0507 0.59 -1.9
600,901 + Rru_A0507 0.59 +0.2
601,331 + Rru_A0507 0.74 +0.8
601,331 + Rru_A0507 0.74 -0.3
601,332 - Rru_A0507 0.74 -3.3
601,332 - Rru_A0507 0.74 +0.7
601,334 - Rru_A0507 0.74 -0.0
601,334 - Rru_A0507 0.74 -0.2
601,334 - Rru_A0507 0.74 -0.5
601,334 - Rru_A0507 0.74 -2.6
601,366 + Rru_A0507 0.75 -2.9
601,366 + Rru_A0507 0.75 +0.3
601,366 + Rru_A0507 0.75 +1.1
601,367 - Rru_A0507 0.75 +0.8
601,367 - Rru_A0507 0.75 -0.4
601,395 - Rru_A0507 0.76 -0.5
601,395 - Rru_A0507 0.76 +0.9
601,395 - Rru_A0507 0.76 -0.0
601,415 + Rru_A0507 0.77 +0.8
601,416 - Rru_A0507 0.77 -1.2
601,416 - Rru_A0507 0.77 -2.5
601,525 + Rru_A0507 0.81 +1.6
601,558 + Rru_A0507 0.82 -1.2
601,563 - Rru_A0507 0.82 +1.1
601,563 - Rru_A0507 0.82 +1.0
601,934 - +1.0
602,063 + -0.9
602,064 - -3.9
602,104 - +1.1
602,174 - -1.1
602,203 + -0.2
602,228 - -0.6
602,284 + Rru_A0508 0.13 +1.2
602,284 + Rru_A0508 0.13 +0.5
602,284 + Rru_A0508 0.13 +1.1
602,285 - Rru_A0508 0.13 -0.4
602,285 - Rru_A0508 0.13 +0.1
602,285 - Rru_A0508 0.13 +0.6
602,468 + Rru_A0508 0.33 -1.1
602,468 + Rru_A0508 0.33 -1.2
602,471 - Rru_A0508 0.34 +0.0
602,471 - Rru_A0508 0.34 +0.5
602,628 + Rru_A0508 0.52 -1.8
602,731 + Rru_A0508 0.63 +0.1
602,731 + Rru_A0508 0.63 -0.1
602,731 + Rru_A0508 0.63 -1.2
602,732 - Rru_A0508 0.63 -2.8
602,732 - Rru_A0508 0.63 +0.4
602,749 + Rru_A0508 0.65 +0.4
602,749 + Rru_A0508 0.65 +0.6
602,750 - Rru_A0508 0.65 -0.6
602,771 - Rru_A0508 0.68 -0.4
602,915 - Rru_A0508 0.84 +0.4
602,915 - Rru_A0508 0.84 -0.5
602,949 + Rru_A0508 0.88 -0.2
602,949 + Rru_A0508 0.88 -0.9
602,950 - Rru_A0508 0.88 -1.4
602,950 - Rru_A0508 0.88 +0.9
603,010 + +0.8
603,010 + +0.0
603,011 - +0.1
603,012 + +0.3
603,013 - +0.2
603,013 - +2.0

Or see this region's nucleotide sequence