Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0502

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0501 and Rru_A0502 are separated by 345 nucleotidesRru_A0502 and Rru_A0503 are separated by 598 nucleotides Rru_A0501: Rru_A0501 - no description, at 586,845 to 586,994 _A0501 Rru_A0502: Rru_A0502 - hypothetical protein (NCBI), at 587,340 to 591,317 _A0502 Rru_A0503: Rru_A0503 - Lysine--tRNA ligase (NCBI), at 591,916 to 593,568 _A0503 Position (kb) 587 588 589 590 591 592Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 586.363 kb on + strandat 586.364 kb on - strandat 586.379 kb on - strandat 586.534 kb on - strandat 586.592 kb on + strandat 586.632 kb on - strandat 586.632 kb on - strandat 586.632 kb on - strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.752 kb on + strandat 586.753 kb on - strandat 586.789 kb on + strandat 586.958 kb on + strand, within Rru_A0501at 587.082 kb on + strandat 587.082 kb on + strandat 587.082 kb on + strandat 587.083 kb on - strandat 587.083 kb on - strandat 587.146 kb on + strandat 587.315 kb on - strandat 587.318 kb on + strandat 587.319 kb on - strandat 587.369 kb on + strandat 587.369 kb on + strandat 587.369 kb on + strandat 587.370 kb on - strandat 587.370 kb on - strandat 587.370 kb on - strandat 587.370 kb on - strandat 587.461 kb on + strandat 587.461 kb on + strandat 587.464 kb on + strandat 587.465 kb on - strandat 587.548 kb on - strandat 587.881 kb on + strand, within Rru_A0502at 587.881 kb on + strand, within Rru_A0502at 587.881 kb on + strand, within Rru_A0502at 587.881 kb on + strand, within Rru_A0502at 587.881 kb on + strand, within Rru_A0502at 587.882 kb on - strand, within Rru_A0502at 587.949 kb on + strand, within Rru_A0502at 587.950 kb on - strand, within Rru_A0502at 587.950 kb on - strand, within Rru_A0502at 587.950 kb on - strand, within Rru_A0502at 588.147 kb on - strand, within Rru_A0502at 588.208 kb on + strand, within Rru_A0502at 588.208 kb on + strand, within Rru_A0502at 588.314 kb on + strand, within Rru_A0502at 588.357 kb on + strand, within Rru_A0502at 588.363 kb on - strand, within Rru_A0502at 588.363 kb on - strand, within Rru_A0502at 588.365 kb on + strand, within Rru_A0502at 588.366 kb on - strand, within Rru_A0502at 588.429 kb on - strand, within Rru_A0502at 588.546 kb on - strand, within Rru_A0502at 588.862 kb on + strand, within Rru_A0502at 588.863 kb on - strand, within Rru_A0502at 588.863 kb on - strand, within Rru_A0502at 588.910 kb on + strand, within Rru_A0502at 588.910 kb on + strand, within Rru_A0502at 588.911 kb on - strand, within Rru_A0502at 588.911 kb on - strand, within Rru_A0502at 589.019 kb on - strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.048 kb on + strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.049 kb on - strand, within Rru_A0502at 589.094 kb on + strand, within Rru_A0502at 589.094 kb on + strand, within Rru_A0502at 589.094 kb on + strand, within Rru_A0502at 589.094 kb on + strand, within Rru_A0502at 589.095 kb on - strand, within Rru_A0502at 589.270 kb on + strand, within Rru_A0502at 589.270 kb on + strand, within Rru_A0502at 589.287 kb on + strand, within Rru_A0502at 589.287 kb on + strand, within Rru_A0502at 589.287 kb on + strand, within Rru_A0502at 589.287 kb on + strand, within Rru_A0502at 589.288 kb on - strand, within Rru_A0502at 589.288 kb on - strand, within Rru_A0502at 589.288 kb on - strand, within Rru_A0502at 589.396 kb on + strand, within Rru_A0502at 589.397 kb on - strand, within Rru_A0502at 589.397 kb on - strand, within Rru_A0502at 589.410 kb on + strand, within Rru_A0502at 589.410 kb on + strand, within Rru_A0502at 589.411 kb on - strand, within Rru_A0502at 589.411 kb on - strand, within Rru_A0502at 589.413 kb on - strand, within Rru_A0502at 589.443 kb on + strand, within Rru_A0502at 589.590 kb on + strand, within Rru_A0502at 589.613 kb on + strand, within Rru_A0502at 589.613 kb on + strand, within Rru_A0502at 589.615 kb on + strand, within Rru_A0502at 589.615 kb on + strand, within Rru_A0502at 589.616 kb on - strand, within Rru_A0502at 589.616 kb on - strand, within Rru_A0502at 589.616 kb on - strand, within Rru_A0502at 589.616 kb on - strand, within Rru_A0502at 589.728 kb on + strand, within Rru_A0502at 589.728 kb on + strand, within Rru_A0502at 589.729 kb on - strand, within Rru_A0502at 589.731 kb on - strand, within Rru_A0502at 589.761 kb on + strand, within Rru_A0502at 589.762 kb on - strand, within Rru_A0502at 589.886 kb on + strand, within Rru_A0502at 589.886 kb on + strand, within Rru_A0502at 589.887 kb on - strand, within Rru_A0502at 589.887 kb on - strand, within Rru_A0502at 590.049 kb on + strand, within Rru_A0502at 590.049 kb on + strand, within Rru_A0502at 590.049 kb on + strand, within Rru_A0502at 590.049 kb on + strand, within Rru_A0502at 590.049 kb on + strand, within Rru_A0502at 590.050 kb on - strand, within Rru_A0502at 590.298 kb on - strand, within Rru_A0502at 590.298 kb on - strand, within Rru_A0502at 590.378 kb on - strand, within Rru_A0502at 590.381 kb on + strand, within Rru_A0502at 590.382 kb on - strand, within Rru_A0502at 590.538 kb on + strand, within Rru_A0502at 590.538 kb on + strand, within Rru_A0502at 590.539 kb on - strand, within Rru_A0502at 590.607 kb on + strand, within Rru_A0502at 590.607 kb on + strand, within Rru_A0502at 590.608 kb on - strand, within Rru_A0502at 590.608 kb on - strand, within Rru_A0502at 590.672 kb on + strand, within Rru_A0502at 590.672 kb on + strand, within Rru_A0502at 590.673 kb on - strand, within Rru_A0502at 590.894 kb on + strand, within Rru_A0502at 590.894 kb on + strand, within Rru_A0502at 590.895 kb on - strand, within Rru_A0502at 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.953 kb on - strandat 590.953 kb on - strandat 591.009 kb on + strandat 591.010 kb on - strandat 591.225 kb on - strandat 591.285 kb on - strandat 591.333 kb on - strandat 591.397 kb on + strandat 591.397 kb on + strandat 591.398 kb on - strandat 591.480 kb on - strandat 591.502 kb on - strandat 591.502 kb on - strandat 591.502 kb on - strandat 591.502 kb on - strandat 591.536 kb on + strandat 591.537 kb on - strandat 591.537 kb on - strandat 591.537 kb on - strandat 591.537 kb on - strandat 591.562 kb on - strandat 591.562 kb on - strandat 591.691 kb on + strandat 591.692 kb on - strandat 591.760 kb on + strandat 591.760 kb on + strandat 591.761 kb on - strandat 591.761 kb on - strandat 591.771 kb on + strandat 591.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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586,363 + +1.1
586,364 - -3.6
586,379 - +1.9
586,534 - +1.1
586,592 + +0.6
586,632 - -4.2
586,632 - +0.4
586,632 - -0.3
586,700 + +1.1
586,700 + -0.3
586,701 - -1.9
586,701 - -3.4
586,752 + +0.4
586,753 - -1.4
586,789 + -4.3
586,958 + Rru_A0501 0.75 -1.4
587,082 + -0.2
587,082 + -0.3
587,082 + +1.1
587,083 - +1.1
587,083 - +1.5
587,146 + +1.0
587,315 - +1.7
587,318 + +0.5
587,319 - +1.9
587,369 + -0.6
587,369 + +0.3
587,369 + +0.1
587,370 - +0.5
587,370 - -0.9
587,370 - +0.8
587,370 - -0.6
587,461 + -0.4
587,461 + -0.0
587,464 + +0.2
587,465 - -0.1
587,548 - +0.7
587,881 + Rru_A0502 0.14 +0.0
587,881 + Rru_A0502 0.14 +0.3
587,881 + Rru_A0502 0.14 -0.2
587,881 + Rru_A0502 0.14 -0.8
587,881 + Rru_A0502 0.14 -1.2
587,882 - Rru_A0502 0.14 -1.0
587,949 + Rru_A0502 0.15 -0.0
587,950 - Rru_A0502 0.15 -2.0
587,950 - Rru_A0502 0.15 -1.1
587,950 - Rru_A0502 0.15 +0.2
588,147 - Rru_A0502 0.20 -0.7
588,208 + Rru_A0502 0.22 -1.9
588,208 + Rru_A0502 0.22 -0.6
588,314 + Rru_A0502 0.24 -0.9
588,357 + Rru_A0502 0.26 +0.5
588,363 - Rru_A0502 0.26 -0.5
588,363 - Rru_A0502 0.26 +0.1
588,365 + Rru_A0502 0.26 +0.1
588,366 - Rru_A0502 0.26 -0.5
588,429 - Rru_A0502 0.27 -0.6
588,546 - Rru_A0502 0.30 -3.5
588,862 + Rru_A0502 0.38 +0.9
588,863 - Rru_A0502 0.38 +0.7
588,863 - Rru_A0502 0.38 -2.4
588,910 + Rru_A0502 0.39 -2.2
588,910 + Rru_A0502 0.39 -0.6
588,911 - Rru_A0502 0.39 +0.6
588,911 - Rru_A0502 0.39 -2.3
589,019 - Rru_A0502 0.42 -4.0
589,048 + Rru_A0502 0.43 -1.4
589,048 + Rru_A0502 0.43 -0.5
589,048 + Rru_A0502 0.43 -1.3
589,048 + Rru_A0502 0.43 +0.1
589,048 + Rru_A0502 0.43 +1.3
589,048 + Rru_A0502 0.43 +2.2
589,048 + Rru_A0502 0.43 +0.1
589,049 - Rru_A0502 0.43 +0.5
589,049 - Rru_A0502 0.43 -4.7
589,049 - Rru_A0502 0.43 -2.4
589,049 - Rru_A0502 0.43 +1.1
589,049 - Rru_A0502 0.43 -0.3
589,049 - Rru_A0502 0.43 +0.2
589,094 + Rru_A0502 0.44 +0.6
589,094 + Rru_A0502 0.44 +0.8
589,094 + Rru_A0502 0.44 -2.7
589,094 + Rru_A0502 0.44 +2.0
589,095 - Rru_A0502 0.44 +0.5
589,270 + Rru_A0502 0.49 -0.3
589,270 + Rru_A0502 0.49 -1.5
589,287 + Rru_A0502 0.49 -2.3
589,287 + Rru_A0502 0.49 -2.7
589,287 + Rru_A0502 0.49 -1.6
589,287 + Rru_A0502 0.49 -1.0
589,288 - Rru_A0502 0.49 +0.7
589,288 - Rru_A0502 0.49 +0.3
589,288 - Rru_A0502 0.49 -0.3
589,396 + Rru_A0502 0.52 +0.8
589,397 - Rru_A0502 0.52 +0.5
589,397 - Rru_A0502 0.52 -0.7
589,410 + Rru_A0502 0.52 -1.3
589,410 + Rru_A0502 0.52 -0.9
589,411 - Rru_A0502 0.52 +0.8
589,411 - Rru_A0502 0.52 -0.5
589,413 - Rru_A0502 0.52 +1.4
589,443 + Rru_A0502 0.53 +0.1
589,590 + Rru_A0502 0.57 +0.3
589,613 + Rru_A0502 0.57 +0.3
589,613 + Rru_A0502 0.57 +0.3
589,615 + Rru_A0502 0.57 -0.9
589,615 + Rru_A0502 0.57 -0.1
589,616 - Rru_A0502 0.57 +0.9
589,616 - Rru_A0502 0.57 +1.0
589,616 - Rru_A0502 0.57 -1.0
589,616 - Rru_A0502 0.57 +0.8
589,728 + Rru_A0502 0.60 -1.3
589,728 + Rru_A0502 0.60 +1.0
589,729 - Rru_A0502 0.60 +1.8
589,731 - Rru_A0502 0.60 -0.4
589,761 + Rru_A0502 0.61 +0.4
589,762 - Rru_A0502 0.61 +0.5
589,886 + Rru_A0502 0.64 +1.1
589,886 + Rru_A0502 0.64 +0.6
589,887 - Rru_A0502 0.64 -2.8
589,887 - Rru_A0502 0.64 +1.1
590,049 + Rru_A0502 0.68 -2.8
590,049 + Rru_A0502 0.68 +0.7
590,049 + Rru_A0502 0.68 -1.0
590,049 + Rru_A0502 0.68 +0.8
590,049 + Rru_A0502 0.68 +0.4
590,050 - Rru_A0502 0.68 +0.0
590,298 - Rru_A0502 0.74 -0.1
590,298 - Rru_A0502 0.74 +0.5
590,378 - Rru_A0502 0.76 +0.5
590,381 + Rru_A0502 0.76 +0.5
590,382 - Rru_A0502 0.76 -0.2
590,538 + Rru_A0502 0.80 -2.0
590,538 + Rru_A0502 0.80 +1.2
590,539 - Rru_A0502 0.80 -0.2
590,607 + Rru_A0502 0.82 +0.0
590,607 + Rru_A0502 0.82 +0.5
590,608 - Rru_A0502 0.82 -0.8
590,608 - Rru_A0502 0.82 -3.0
590,672 + Rru_A0502 0.84 +0.5
590,672 + Rru_A0502 0.84 +2.5
590,673 - Rru_A0502 0.84 +0.5
590,894 + Rru_A0502 0.89 +1.3
590,894 + Rru_A0502 0.89 -1.5
590,895 - Rru_A0502 0.89 +0.3
590,952 + -0.6
590,952 + -1.0
590,952 + -1.5
590,952 + +0.2
590,952 + -0.3
590,952 + -2.6
590,953 - +0.4
590,953 - -0.5
591,009 + -0.6
591,010 - -1.6
591,225 - -3.4
591,285 - -0.5
591,333 - +0.2
591,397 + +0.7
591,397 + -1.2
591,398 - +0.3
591,480 - -2.0
591,502 - -0.2
591,502 - +0.3
591,502 - -0.6
591,502 - +0.7
591,536 + +1.4
591,537 - -0.4
591,537 - +0.7
591,537 - -0.8
591,537 - -0.7
591,562 - -0.7
591,562 - -0.1
591,691 + +1.4
591,692 - -0.4
591,760 + +0.3
591,760 + +0.8
591,761 - +0.5
591,761 - -0.3
591,771 + +0.3
591,896 + +1.2

Or see this region's nucleotide sequence