Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0500

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0498 and Rru_A0499 overlap by 4 nucleotidesRru_A0499 and Rru_A0500 are separated by 111 nucleotidesRru_A0500 and Rru_A0501 are separated by 547 nucleotides Rru_A0498: Rru_A0498 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 583,431 to 584,213 _A0498 Rru_A0499: Rru_A0499 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 584,210 to 585,082 _A0499 Rru_A0500: Rru_A0500 - extracellular solute-binding protein, family 1 (NCBI), at 585,194 to 586,297 _A0500 Rru_A0501: Rru_A0501 - no description, at 586,845 to 586,994 _A0501 Position (kb) 585 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 584.254 kb on + strandat 584.254 kb on + strandat 584.255 kb on - strandat 584.255 kb on - strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.308 kb on - strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499at 584.397 kb on + strand, within Rru_A0499at 584.397 kb on + strand, within Rru_A0499at 584.493 kb on + strand, within Rru_A0499at 584.494 kb on - strand, within Rru_A0499at 584.598 kb on + strand, within Rru_A0499at 584.599 kb on - strand, within Rru_A0499at 584.599 kb on - strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.653 kb on - strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.834 kb on + strand, within Rru_A0499at 584.835 kb on - strand, within Rru_A0499at 584.892 kb on + strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 585.015 kb on + strandat 585.016 kb on - strandat 585.082 kb on + strandat 585.082 kb on + strandat 585.082 kb on + strandat 585.083 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.291 kb on + strandat 585.379 kb on - strand, within Rru_A0500at 585.379 kb on - strand, within Rru_A0500at 585.414 kb on + strand, within Rru_A0500at 585.414 kb on + strand, within Rru_A0500at 585.420 kb on + strand, within Rru_A0500at 585.421 kb on - strand, within Rru_A0500at 585.421 kb on - strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.480 kb on + strand, within Rru_A0500at 585.480 kb on + strand, within Rru_A0500at 585.481 kb on - strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.566 kb on - strand, within Rru_A0500at 585.566 kb on - strand, within Rru_A0500at 585.567 kb on + strand, within Rru_A0500at 585.567 kb on + strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.729 kb on + strand, within Rru_A0500at 585.730 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.876 kb on + strand, within Rru_A0500at 585.876 kb on + strand, within Rru_A0500at 585.877 kb on - strand, within Rru_A0500at 585.877 kb on - strand, within Rru_A0500at 585.944 kb on - strand, within Rru_A0500at 586.028 kb on - strand, within Rru_A0500at 586.100 kb on - strand, within Rru_A0500at 586.100 kb on - strand, within Rru_A0500at 586.107 kb on + strand, within Rru_A0500at 586.107 kb on + strand, within Rru_A0500at 586.108 kb on - strand, within Rru_A0500at 586.108 kb on - strand, within Rru_A0500at 586.284 kb on + strandat 586.285 kb on - strandat 586.324 kb on - strandat 586.324 kb on - strandat 586.324 kb on - strandat 586.363 kb on + strandat 586.364 kb on - strandat 586.379 kb on - strandat 586.534 kb on - strandat 586.592 kb on + strandat 586.632 kb on - strandat 586.632 kb on - strandat 586.632 kb on - strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.752 kb on + strandat 586.753 kb on - strandat 586.789 kb on + strandat 586.958 kb on + strand, within Rru_A0501at 587.082 kb on + strandat 587.082 kb on + strandat 587.082 kb on + strandat 587.083 kb on - strandat 587.083 kb on - strandat 587.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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584,254 + +0.6
584,254 + +0.5
584,255 - +0.1
584,255 - +0.2
584,256 + -1.5
584,256 + -1.7
584,256 + -0.2
584,256 + -3.4
584,257 - +0.1
584,257 - -0.4
584,257 - -0.0
584,257 - -3.2
584,257 - -0.6
584,257 - -0.2
584,257 - +0.5
584,308 - Rru_A0499 0.11 +0.2
584,352 + Rru_A0499 0.16 -0.9
584,352 + Rru_A0499 0.16 -1.5
584,352 + Rru_A0499 0.16 +0.4
584,353 - Rru_A0499 0.16 +0.9
584,353 - Rru_A0499 0.16 -0.1
584,397 + Rru_A0499 0.21 +0.4
584,397 + Rru_A0499 0.21 -0.1
584,493 + Rru_A0499 0.32 -1.0
584,494 - Rru_A0499 0.33 +1.4
584,598 + Rru_A0499 0.44 +0.2
584,599 - Rru_A0499 0.45 +0.2
584,599 - Rru_A0499 0.45 +0.8
584,604 + Rru_A0499 0.45 -1.1
584,604 + Rru_A0499 0.45 +0.5
584,604 + Rru_A0499 0.45 +0.6
584,604 + Rru_A0499 0.45 +0.5
584,604 + Rru_A0499 0.45 +1.3
584,604 + Rru_A0499 0.45 -0.6
584,604 + Rru_A0499 0.45 -2.7
584,604 + Rru_A0499 0.45 -1.5
584,605 - Rru_A0499 0.45 -0.5
584,605 - Rru_A0499 0.45 -0.3
584,605 - Rru_A0499 0.45 +0.1
584,605 - Rru_A0499 0.45 +1.0
584,605 - Rru_A0499 0.45 -0.4
584,652 + Rru_A0499 0.51 +2.3
584,652 + Rru_A0499 0.51 -1.6
584,652 + Rru_A0499 0.51 -0.0
584,653 - Rru_A0499 0.51 +1.1
584,693 + Rru_A0499 0.55 -0.0
584,693 + Rru_A0499 0.55 -0.4
584,693 + Rru_A0499 0.55 -1.4
584,834 + Rru_A0499 0.71 -0.3
584,835 - Rru_A0499 0.72 -2.0
584,892 + Rru_A0499 0.78 -1.1
584,893 - Rru_A0499 0.78 +0.5
584,893 - Rru_A0499 0.78 -0.3
584,893 - Rru_A0499 0.78 -2.8
585,015 + -0.4
585,016 - -0.2
585,082 + +0.0
585,082 + -0.5
585,082 + -2.9
585,083 - +1.0
585,196 - +0.1
585,196 - -0.4
585,196 - -1.8
585,196 - -0.1
585,291 + -3.6
585,379 - Rru_A0500 0.17 +1.2
585,379 - Rru_A0500 0.17 +0.3
585,414 + Rru_A0500 0.20 -0.8
585,414 + Rru_A0500 0.20 -0.7
585,420 + Rru_A0500 0.20 +1.7
585,421 - Rru_A0500 0.21 +2.1
585,421 - Rru_A0500 0.21 -1.1
585,459 + Rru_A0500 0.24 +2.5
585,459 + Rru_A0500 0.24 -0.4
585,459 + Rru_A0500 0.24 +1.1
585,480 + Rru_A0500 0.26 -1.9
585,480 + Rru_A0500 0.26 +1.0
585,481 - Rru_A0500 0.26 +0.1
585,565 + Rru_A0500 0.34 +0.3
585,565 + Rru_A0500 0.34 -1.7
585,565 + Rru_A0500 0.34 -0.1
585,565 + Rru_A0500 0.34 +2.7
585,566 - Rru_A0500 0.34 -0.3
585,566 - Rru_A0500 0.34 +1.7
585,567 + Rru_A0500 0.34 -0.3
585,567 + Rru_A0500 0.34 -3.9
585,568 - Rru_A0500 0.34 +0.2
585,568 - Rru_A0500 0.34 +0.7
585,568 - Rru_A0500 0.34 -0.1
585,568 - Rru_A0500 0.34 +0.1
585,729 + Rru_A0500 0.48 +0.3
585,730 - Rru_A0500 0.49 -0.6
585,793 - Rru_A0500 0.54 +0.2
585,793 - Rru_A0500 0.54 +0.7
585,793 - Rru_A0500 0.54 -3.0
585,873 + Rru_A0500 0.62 -0.5
585,873 + Rru_A0500 0.62 -1.4
585,873 + Rru_A0500 0.62 +0.7
585,876 + Rru_A0500 0.62 +1.3
585,876 + Rru_A0500 0.62 -0.4
585,877 - Rru_A0500 0.62 -0.2
585,877 - Rru_A0500 0.62 +1.6
585,944 - Rru_A0500 0.68 +0.6
586,028 - Rru_A0500 0.76 -0.8
586,100 - Rru_A0500 0.82 +0.1
586,100 - Rru_A0500 0.82 +0.6
586,107 + Rru_A0500 0.83 +0.8
586,107 + Rru_A0500 0.83 +0.7
586,108 - Rru_A0500 0.83 +0.2
586,108 - Rru_A0500 0.83 +0.4
586,284 + -3.0
586,285 - -0.8
586,324 - +0.7
586,324 - -0.2
586,324 - -0.5
586,363 + +1.1
586,364 - -3.6
586,379 - +1.9
586,534 - +1.1
586,592 + +0.6
586,632 - -4.2
586,632 - +0.4
586,632 - -0.3
586,700 + +1.1
586,700 + -0.3
586,701 - -1.9
586,701 - -3.4
586,752 + +0.4
586,753 - -1.4
586,789 + -4.3
586,958 + Rru_A0501 0.75 -1.4
587,082 + -0.2
587,082 + -0.3
587,082 + +1.1
587,083 - +1.1
587,083 - +1.5
587,146 + +1.0

Or see this region's nucleotide sequence