Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0461

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0459 and Rru_A0460 are separated by 121 nucleotidesRru_A0460 and Rru_A0461 are separated by 105 nucleotidesRru_A0461 and Rru_A0462 are separated by 26 nucleotides Rru_A0459: Rru_A0459 - hypothetical protein (NCBI), at 538,980 to 539,894 _A0459 Rru_A0460: Rru_A0460 - NADP oxidoreductase, coenzyme F420-dependent (NCBI), at 540,016 to 540,642 _A0460 Rru_A0461: Rru_A0461 - Transcriptional Regulator, LysR family (NCBI), at 540,748 to 541,641 _A0461 Rru_A0462: Rru_A0462 - Aldehyde dehydrogenase (NCBI), at 541,668 to 543,248 _A0462 Position (kb) 540 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 539.858 kb on + strandat 539.859 kb on - strandat 539.893 kb on - strandat 539.893 kb on - strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.900 kb on + strandat 539.901 kb on - strandat 539.901 kb on - strandat 539.901 kb on - strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.075 kb on - strandat 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.627 kb on + strandat 540.627 kb on + strandat 540.628 kb on - strandat 540.628 kb on - strandat 540.940 kb on + strand, within Rru_A0461at 540.941 kb on - strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 541.087 kb on + strand, within Rru_A0461at 541.122 kb on + strand, within Rru_A0461at 541.179 kb on + strand, within Rru_A0461at 541.254 kb on + strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.639 kb on + strandat 541.640 kb on - strandat 541.873 kb on - strand, within Rru_A0462at 541.873 kb on - strand, within Rru_A0462at 541.873 kb on - strand, within Rru_A0462at 542.059 kb on - strand, within Rru_A0462at 542.142 kb on + strand, within Rru_A0462at 542.142 kb on + strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.143 kb on - strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.145 kb on + strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.146 kb on - strand, within Rru_A0462at 542.171 kb on + strand, within Rru_A0462at 542.171 kb on + strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.172 kb on - strand, within Rru_A0462at 542.265 kb on + strand, within Rru_A0462at 542.266 kb on - strand, within Rru_A0462at 542.268 kb on + strand, within Rru_A0462at 542.269 kb on - strand, within Rru_A0462at 542.269 kb on - strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.404 kb on - strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.406 kb on - strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.597 kb on + strand, within Rru_A0462

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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539,858 + +0.6
539,859 - -0.2
539,893 - -0.4
539,893 - -0.0
539,898 + +0.6
539,898 + -2.4
539,898 + +0.1
539,898 + +0.1
539,900 + -0.1
539,901 - +0.7
539,901 - -2.4
539,901 - +0.1
540,074 + +0.3
540,074 + -1.0
540,074 + -0.3
540,074 + -0.6
540,075 - -0.2
540,377 + Rru_A0460 0.58 +0.3
540,377 + Rru_A0460 0.58 +0.4
540,377 + Rru_A0460 0.58 -3.8
540,377 + Rru_A0460 0.58 -0.5
540,378 - Rru_A0460 0.58 +0.2
540,378 - Rru_A0460 0.58 +0.6
540,378 - Rru_A0460 0.58 +0.5
540,378 - Rru_A0460 0.58 +1.0
540,378 - Rru_A0460 0.58 +0.6
540,381 + Rru_A0460 0.58 -0.1
540,381 + Rru_A0460 0.58 -1.8
540,381 + Rru_A0460 0.58 +0.2
540,381 + Rru_A0460 0.58 -0.4
540,381 + Rru_A0460 0.58 -2.7
540,381 + Rru_A0460 0.58 +0.3
540,381 + Rru_A0460 0.58 -0.2
540,381 + Rru_A0460 0.58 +0.3
540,382 - Rru_A0460 0.58 -3.8
540,382 - Rru_A0460 0.58 +0.8
540,382 - Rru_A0460 0.58 -1.2
540,382 - Rru_A0460 0.58 -0.9
540,382 - Rru_A0460 0.58 -0.6
540,382 - Rru_A0460 0.58 +0.5
540,627 + -1.1
540,627 + +0.4
540,628 - +1.0
540,628 - +0.4
540,940 + Rru_A0461 0.21 -2.1
540,941 - Rru_A0461 0.22 -0.6
540,943 + Rru_A0461 0.22 +0.7
540,943 + Rru_A0461 0.22 -0.2
540,943 + Rru_A0461 0.22 -0.1
540,943 + Rru_A0461 0.22 +0.7
540,944 - Rru_A0461 0.22 -2.3
540,944 - Rru_A0461 0.22 -0.1
541,087 + Rru_A0461 0.38 -0.4
541,122 + Rru_A0461 0.42 +0.8
541,179 + Rru_A0461 0.48 +0.1
541,254 + Rru_A0461 0.57 -0.3
541,255 - Rru_A0461 0.57 +0.3
541,255 - Rru_A0461 0.57 +0.1
541,258 + Rru_A0461 0.57 +1.6
541,258 + Rru_A0461 0.57 +1.5
541,258 + Rru_A0461 0.57 +0.5
541,258 + Rru_A0461 0.57 +0.1
541,258 + Rru_A0461 0.57 +0.2
541,259 - Rru_A0461 0.57 +0.0
541,259 - Rru_A0461 0.57 -4.3
541,259 - Rru_A0461 0.57 -0.1
541,321 + Rru_A0461 0.64 -0.8
541,321 + Rru_A0461 0.64 +0.5
541,321 + Rru_A0461 0.64 +1.5
541,321 + Rru_A0461 0.64 +0.7
541,322 - Rru_A0461 0.64 -0.6
541,322 - Rru_A0461 0.64 +0.3
541,322 - Rru_A0461 0.64 -0.6
541,322 - Rru_A0461 0.64 +0.8
541,322 - Rru_A0461 0.64 +0.6
541,322 - Rru_A0461 0.64 +0.2
541,327 + Rru_A0461 0.65 -0.9
541,327 + Rru_A0461 0.65 -3.5
541,327 + Rru_A0461 0.65 -1.0
541,639 + -1.0
541,640 - +0.4
541,873 - Rru_A0462 0.13 -2.0
541,873 - Rru_A0462 0.13 -0.7
541,873 - Rru_A0462 0.13 -0.0
542,059 - Rru_A0462 0.25 +0.5
542,142 + Rru_A0462 0.30 +0.8
542,142 + Rru_A0462 0.30 +0.2
542,143 - Rru_A0462 0.30 +0.5
542,143 - Rru_A0462 0.30 +0.3
542,143 - Rru_A0462 0.30 +0.1
542,143 - Rru_A0462 0.30 +0.2
542,143 - Rru_A0462 0.30 +0.5
542,143 - Rru_A0462 0.30 -0.1
542,143 - Rru_A0462 0.30 -0.3
542,145 + Rru_A0462 0.30 -0.0
542,145 + Rru_A0462 0.30 -1.4
542,145 + Rru_A0462 0.30 -1.9
542,146 - Rru_A0462 0.30 +0.6
542,146 - Rru_A0462 0.30 -0.3
542,146 - Rru_A0462 0.30 -2.3
542,146 - Rru_A0462 0.30 -0.6
542,171 + Rru_A0462 0.32 -0.2
542,171 + Rru_A0462 0.32 -0.3
542,172 - Rru_A0462 0.32 +0.2
542,172 - Rru_A0462 0.32 -0.1
542,172 - Rru_A0462 0.32 -0.2
542,265 + Rru_A0462 0.38 +1.6
542,266 - Rru_A0462 0.38 -0.3
542,268 + Rru_A0462 0.38 +1.4
542,269 - Rru_A0462 0.38 +0.1
542,269 - Rru_A0462 0.38 +1.3
542,403 + Rru_A0462 0.46 +0.1
542,403 + Rru_A0462 0.46 -0.1
542,404 - Rru_A0462 0.47 +0.1
542,405 + Rru_A0462 0.47 +1.1
542,405 + Rru_A0462 0.47 -0.2
542,405 + Rru_A0462 0.47 -1.7
542,406 - Rru_A0462 0.47 +0.5
542,424 + Rru_A0462 0.48 -3.0
542,424 + Rru_A0462 0.48 +1.3
542,424 + Rru_A0462 0.48 +0.5
542,425 - Rru_A0462 0.48 -2.5
542,425 - Rru_A0462 0.48 +1.1
542,597 + Rru_A0462 0.59 -0.1

Or see this region's nucleotide sequence