Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0363 and Rru_A0364 are separated by 13 nucleotides Rru_A0364 and Rru_A0365 are separated by 361 nucleotides Rru_A0365 and Rru_A0366 are separated by 1 nucleotides
Rru_A0363: Rru_A0363 - Cytochrome b/b6-like (NCBI), at 437,366 to 438,583
_A0363
Rru_A0364: Rru_A0364 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 438,597 to 439,148
_A0364
Rru_A0365: Rru_A0365 - tRNA/rRNA methyltransferase (SpoU) (NCBI), at 439,510 to 439,992
_A0365
Rru_A0366: Rru_A0366 - Polynucleotide adenylyltransferase region (NCBI), at 439,994 to 441,571
_A0366
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 439.226 kb on - strand at 439.247 kb on - strand at 439.322 kb on - strand at 439.428 kb on + strand at 439.429 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.520 kb on + strand at 439.520 kb on + strand at 439.528 kb on + strand at 439.529 kb on - strand at 439.529 kb on - strand at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.566 kb on - strand, within Rru_A0365 at 439.604 kb on + strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.640 kb on + strand, within Rru_A0365 at 439.660 kb on + strand, within Rru_A0365 at 439.661 kb on - strand, within Rru_A0365 at 439.995 kb on + strand at 439.995 kb on + strand at 439.995 kb on + strand at 439.995 kb on + strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 439,226 - -3.3 439,247 - -0.6 439,322 - -1.0 439,428 + +0.1 439,429 - -0.4 439,431 - -0.9 439,431 - -0.6 439,431 - -1.5 439,431 - +0.4 439,520 + -4.2 439,520 + +1.1 439,528 + +1.4 439,529 - -0.0 439,529 - +0.5 439,562 + Rru_A0365 0.11 +1.8 439,562 + Rru_A0365 0.11 -2.9 439,562 + Rru_A0365 0.11 +0.2 439,563 - Rru_A0365 0.11 +0.4 439,563 - Rru_A0365 0.11 +0.5 439,566 - Rru_A0365 0.12 +0.7 439,604 + Rru_A0365 0.19 +1.1 439,605 - Rru_A0365 0.20 +0.7 439,605 - Rru_A0365 0.20 -2.5 439,605 - Rru_A0365 0.20 +0.4 439,640 + Rru_A0365 0.27 -2.3 439,660 + Rru_A0365 0.31 -2.4 439,661 - Rru_A0365 0.31 +0.9 439,995 + -0.2 439,995 + -0.3 439,995 + -0.1 439,995 + -2.3 439,996 - -4.3 439,996 - -1.0 439,996 - +1.4 439,996 - +0.2 439,996 - -0.9 439,997 + +0.3
Or see this region's nucleotide sequence