Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0336 and Rru_A0337 are separated by 157 nucleotides Rru_A0337 and Rru_A0338 are separated by 54 nucleotides Rru_A0338 and Rru_A0339 overlap by 4 nucleotides Rru_A0339 and Rru_A0340 are separated by 787 nucleotides
Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774
_A0336
Rru_A0337: Rru_A0337 - Predicted transcriptional regulator (NCBI), at 408,932 to 409,318
_A0337
Rru_A0338: Rru_A0338 - hypothetical protein (NCBI), at 409,373 to 409,699
_A0338
Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487
_A0339
Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932
_A0340
Position (kb) 409
410
411 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 408.773 kb on - strand at 408.925 kb on + strand at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.075 kb on + strand, within Rru_A0337 at 409.076 kb on - strand, within Rru_A0337 at 409.290 kb on + strand at 409.339 kb on + strand at 409.340 kb on - strand at 409.406 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.447 kb on - strand, within Rru_A0338 at 409.547 kb on + strand, within Rru_A0338 at 409.570 kb on + strand, within Rru_A0338 at 409.944 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.188 kb on + strand, within Rru_A0339 at 410.188 kb on + strand, within Rru_A0339 at 410.189 kb on - strand, within Rru_A0339 at 410.189 kb on - strand, within Rru_A0339 at 410.258 kb on + strand, within Rru_A0339 at 410.317 kb on + strand, within Rru_A0339 at 410.500 kb on + strand at 410.501 kb on - strand at 410.501 kb on - strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.901 kb on + strand at 410.901 kb on + strand at 410.902 kb on - strand at 410.902 kb on - strand at 410.978 kb on - strand at 411.356 kb on + strand at 411.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 408,773 - +0.0 408,925 + -0.7 409,029 + Rru_A0337 0.25 -0.3 409,029 + Rru_A0337 0.25 +2.3 409,029 + Rru_A0337 0.25 -3.0 409,029 + Rru_A0337 0.25 -2.3 409,029 + Rru_A0337 0.25 -0.9 409,075 + Rru_A0337 0.37 -1.7 409,076 - Rru_A0337 0.37 +0.5 409,290 + +0.2 409,339 + +1.1 409,340 - -0.8 409,406 + Rru_A0338 0.10 +0.1 409,446 + Rru_A0338 0.22 +0.2 409,446 + Rru_A0338 0.22 +1.2 409,446 + Rru_A0338 0.22 -1.9 409,447 - Rru_A0338 0.23 +0.7 409,547 + Rru_A0338 0.53 +0.7 409,570 + Rru_A0338 0.60 +0.9 409,944 + Rru_A0339 0.31 -0.1 410,109 + Rru_A0339 0.52 +0.2 410,109 + Rru_A0339 0.52 -1.9 410,109 + Rru_A0339 0.52 +1.6 410,109 + Rru_A0339 0.52 +0.0 410,109 + Rru_A0339 0.52 -0.2 410,110 - Rru_A0339 0.52 -0.4 410,110 - Rru_A0339 0.52 +0.2 410,110 - Rru_A0339 0.52 -0.5 410,110 - Rru_A0339 0.52 +0.0 410,110 - Rru_A0339 0.52 +0.2 410,110 - Rru_A0339 0.52 -0.3 410,188 + Rru_A0339 0.62 +1.6 410,188 + Rru_A0339 0.62 +0.1 410,189 - Rru_A0339 0.62 +1.0 410,189 - Rru_A0339 0.62 +1.6 410,258 + Rru_A0339 0.71 -0.8 410,317 + Rru_A0339 0.78 -4.0 410,500 + +0.9 410,501 - +0.6 410,501 - +0.0 410,687 + -0.1 410,688 - -1.5 410,901 + -0.1 410,901 + +1.6 410,902 - -0.0 410,902 - -0.4 410,978 - -1.0 411,356 + -0.7 411,357 - +0.9
Or see this region's nucleotide sequence