Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0255 and Rru_A0256 overlap by 4 nucleotides Rru_A0256 and Rru_A0257 are separated by 70 nucleotides Rru_A0257 and Rru_A0258 overlap by 4 nucleotides
Rru_A0255: Rru_A0255 - hypothetical protein (NCBI), at 317,086 to 317,742
_A0255
Rru_A0256: Rru_A0256 - GCN5-related N-acetyltransferase (NCBI), at 317,739 to 318,245
_A0256
Rru_A0257: Rru_A0257 - Protein of unknown function DUF898 (NCBI), at 318,316 to 319,392
_A0257
Rru_A0258: Rru_A0258 - Peptidase M48, Ste24p (NCBI), at 319,389 to 320,447
_A0258
Position (kb) 318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 317.793 kb on + strand, within Rru_A0256 at 317.793 kb on + strand, within Rru_A0256 at 317.793 kb on + strand, within Rru_A0256 at 317.794 kb on - strand, within Rru_A0256 at 317.794 kb on - strand, within Rru_A0256 at 318.003 kb on + strand, within Rru_A0256 at 318.003 kb on + strand, within Rru_A0256 at 318.003 kb on + strand, within Rru_A0256 at 318.003 kb on + strand, within Rru_A0256 at 318.003 kb on + strand, within Rru_A0256 at 318.004 kb on - strand, within Rru_A0256 at 318.004 kb on - strand, within Rru_A0256 at 318.004 kb on - strand, within Rru_A0256 at 318.004 kb on - strand, within Rru_A0256 at 318.004 kb on - strand, within Rru_A0256 at 318.005 kb on + strand, within Rru_A0256 at 318.005 kb on + strand, within Rru_A0256 at 318.006 kb on - strand, within Rru_A0256 at 318.006 kb on - strand, within Rru_A0256 at 318.006 kb on - strand, within Rru_A0256 at 318.006 kb on - strand, within Rru_A0256 at 318.207 kb on + strand at 318.208 kb on - strand at 318.243 kb on + strand at 318.244 kb on - strand at 318.277 kb on + strand at 318.278 kb on - strand at 318.278 kb on - strand at 318.404 kb on - strand at 318.490 kb on + strand, within Rru_A0257 at 318.490 kb on + strand, within Rru_A0257 at 318.490 kb on + strand, within Rru_A0257 at 318.554 kb on + strand, within Rru_A0257 at 318.595 kb on + strand, within Rru_A0257 at 318.596 kb on - strand, within Rru_A0257 at 318.596 kb on - strand, within Rru_A0257 at 318.649 kb on + strand, within Rru_A0257 at 318.649 kb on + strand, within Rru_A0257 at 318.649 kb on + strand, within Rru_A0257 at 318.649 kb on + strand, within Rru_A0257 at 318.650 kb on - strand, within Rru_A0257 at 318.907 kb on + strand, within Rru_A0257 at 318.907 kb on + strand, within Rru_A0257 at 318.908 kb on - strand, within Rru_A0257 at 318.908 kb on - strand, within Rru_A0257 at 319.090 kb on + strand, within Rru_A0257 at 319.091 kb on - strand, within Rru_A0257 at 319.264 kb on + strand, within Rru_A0257 at 319.264 kb on + strand, within Rru_A0257 at 319.265 kb on - strand, within Rru_A0257 at 320.220 kb on + strand, within Rru_A0258 at 320.250 kb on - strand, within Rru_A0258 at 320.250 kb on - strand, within Rru_A0258 at 320.280 kb on + strand, within Rru_A0258 at 320.280 kb on + strand, within Rru_A0258 at 320.281 kb on - strand, within Rru_A0258 at 320.281 kb on - strand, within Rru_A0258 at 320.281 kb on - strand, within Rru_A0258
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 317,793 + Rru_A0256 0.11 -0.8 317,793 + Rru_A0256 0.11 -0.9 317,793 + Rru_A0256 0.11 +1.3 317,794 - Rru_A0256 0.11 -2.0 317,794 - Rru_A0256 0.11 +0.2 318,003 + Rru_A0256 0.52 -1.6 318,003 + Rru_A0256 0.52 +0.7 318,003 + Rru_A0256 0.52 -4.3 318,003 + Rru_A0256 0.52 +0.2 318,003 + Rru_A0256 0.52 -0.4 318,004 - Rru_A0256 0.52 -0.8 318,004 - Rru_A0256 0.52 +0.9 318,004 - Rru_A0256 0.52 +0.3 318,004 - Rru_A0256 0.52 +0.3 318,004 - Rru_A0256 0.52 +0.2 318,005 + Rru_A0256 0.52 +0.2 318,005 + Rru_A0256 0.52 +1.0 318,006 - Rru_A0256 0.53 -2.8 318,006 - Rru_A0256 0.53 +0.5 318,006 - Rru_A0256 0.53 +1.6 318,006 - Rru_A0256 0.53 -0.5 318,207 + -3.2 318,208 - +0.3 318,243 + +0.2 318,244 - -2.6 318,277 + -0.1 318,278 - -1.3 318,278 - +1.1 318,404 - +1.3 318,490 + Rru_A0257 0.16 -0.1 318,490 + Rru_A0257 0.16 +0.5 318,490 + Rru_A0257 0.16 -0.9 318,554 + Rru_A0257 0.22 -1.3 318,595 + Rru_A0257 0.26 -3.9 318,596 - Rru_A0257 0.26 -1.1 318,596 - Rru_A0257 0.26 -0.2 318,649 + Rru_A0257 0.31 +0.5 318,649 + Rru_A0257 0.31 +0.9 318,649 + Rru_A0257 0.31 +0.5 318,649 + Rru_A0257 0.31 -0.1 318,650 - Rru_A0257 0.31 -4.4 318,907 + Rru_A0257 0.55 -0.5 318,907 + Rru_A0257 0.55 -1.1 318,908 - Rru_A0257 0.55 -0.4 318,908 - Rru_A0257 0.55 -1.5 319,090 + Rru_A0257 0.72 -0.7 319,091 - Rru_A0257 0.72 -0.5 319,264 + Rru_A0257 0.88 -0.2 319,264 + Rru_A0257 0.88 -0.8 319,265 - Rru_A0257 0.88 +0.2 320,220 + Rru_A0258 0.78 -0.7 320,250 - Rru_A0258 0.81 -0.9 320,250 - Rru_A0258 0.81 -0.0 320,280 + Rru_A0258 0.84 +1.6 320,280 + Rru_A0258 0.84 +1.5 320,281 - Rru_A0258 0.84 +0.6 320,281 - Rru_A0258 0.84 -0.7 320,281 - Rru_A0258 0.84 -0.3
Or see this region's nucleotide sequence