Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0084

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0083 and Rru_A0084 are separated by 100 nucleotidesRru_A0084 and Rru_A0085 are separated by 88 nucleotides Rru_A0083: Rru_A0083 - nuclease, SNase-like (NCBI), at 96,304 to 97,128 _A0083 Rru_A0084: Rru_A0084 - Peptidase S33, proline iminopeptidase 1 (NCBI), at 97,229 to 98,185 _A0084 Rru_A0085: Rru_A0085 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 98,274 to 99,635 _A0085 Position (kb) 97 98 99Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 96.229 kb on + strandat 96.230 kb on - strandat 96.245 kb on + strandat 96.245 kb on + strandat 96.245 kb on + strandat 96.246 kb on - strandat 96.246 kb on - strandat 96.555 kb on + strand, within Rru_A0083at 96.555 kb on + strand, within Rru_A0083at 96.555 kb on + strand, within Rru_A0083at 96.556 kb on - strand, within Rru_A0083at 96.556 kb on - strand, within Rru_A0083at 96.595 kb on + strand, within Rru_A0083at 96.596 kb on - strand, within Rru_A0083at 97.115 kb on - strandat 97.127 kb on - strandat 97.142 kb on + strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.154 kb on + strandat 97.155 kb on - strandat 97.155 kb on - strandat 97.409 kb on + strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.492 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.775 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.842 kb on - strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 98.113 kb on + strandat 98.114 kb on - strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.227 kb on + strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.228 kb on - strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.363 kb on + strandat 98.364 kb on - strandat 98.364 kb on - strandat 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.470 kb on + strand, within Rru_A0085at 98.471 kb on - strand, within Rru_A0085at 98.471 kb on - strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.529 kb on + strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.530 kb on - strand, within Rru_A0085at 98.606 kb on + strand, within Rru_A0085at 98.622 kb on + strand, within Rru_A0085at 98.622 kb on + strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.623 kb on - strand, within Rru_A0085at 98.636 kb on + strand, within Rru_A0085at 98.636 kb on + strand, within Rru_A0085at 98.637 kb on - strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.656 kb on - strand, within Rru_A0085at 98.739 kb on + strand, within Rru_A0085at 98.740 kb on - strand, within Rru_A0085at 98.741 kb on + strand, within Rru_A0085at 98.742 kb on - strand, within Rru_A0085at 98.764 kb on - strand, within Rru_A0085at 98.854 kb on - strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.129 kb on + strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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96,229 + +0.1
96,230 - +0.6
96,245 + -1.0
96,245 + -0.6
96,245 + +0.4
96,246 - +0.7
96,246 - -3.8
96,555 + Rru_A0083 0.30 +2.3
96,555 + Rru_A0083 0.30 +0.6
96,555 + Rru_A0083 0.30 -2.5
96,556 - Rru_A0083 0.31 +0.1
96,556 - Rru_A0083 0.31 +0.1
96,595 + Rru_A0083 0.35 +0.9
96,596 - Rru_A0083 0.35 -0.1
97,115 - +1.5
97,127 - +1.2
97,142 + -0.3
97,143 - +0.0
97,143 - -0.8
97,145 + -0.5
97,145 + +1.3
97,145 + -2.6
97,145 + -0.2
97,145 + +0.2
97,145 + +0.5
97,146 - -0.0
97,146 - -1.8
97,146 - +0.0
97,146 - -2.4
97,146 - +0.4
97,152 + -1.2
97,152 + -0.4
97,152 + +0.7
97,152 + -0.1
97,153 - +0.7
97,153 - +1.0
97,153 - +1.1
97,153 - -0.7
97,153 - +0.2
97,154 + +0.0
97,155 - -1.9
97,155 - +0.3
97,409 + Rru_A0084 0.19 -0.4
97,410 - Rru_A0084 0.19 -1.2
97,410 - Rru_A0084 0.19 -2.0
97,438 + Rru_A0084 0.22 +0.6
97,438 + Rru_A0084 0.22 +0.5
97,439 - Rru_A0084 0.22 +1.6
97,439 - Rru_A0084 0.22 -3.1
97,492 + Rru_A0084 0.27 +0.6
97,495 + Rru_A0084 0.28 +0.8
97,495 + Rru_A0084 0.28 +0.5
97,495 + Rru_A0084 0.28 +0.2
97,495 + Rru_A0084 0.28 +2.4
97,496 - Rru_A0084 0.28 -3.7
97,496 - Rru_A0084 0.28 +0.7
97,496 - Rru_A0084 0.28 -0.4
97,775 + Rru_A0084 0.57 -0.8
97,778 + Rru_A0084 0.57 +0.3
97,778 + Rru_A0084 0.57 +0.1
97,841 + Rru_A0084 0.64 +0.3
97,841 + Rru_A0084 0.64 +0.1
97,842 - Rru_A0084 0.64 -1.2
97,931 + Rru_A0084 0.73 +0.4
97,931 + Rru_A0084 0.73 +0.3
97,931 + Rru_A0084 0.73 -0.0
97,931 + Rru_A0084 0.73 -0.8
97,932 - Rru_A0084 0.73 +0.5
97,932 - Rru_A0084 0.73 +0.9
97,932 - Rru_A0084 0.73 -1.2
97,932 - Rru_A0084 0.73 +1.0
97,932 - Rru_A0084 0.73 -0.2
97,932 - Rru_A0084 0.73 -1.0
98,113 + +0.2
98,114 - -0.1
98,227 + -0.2
98,227 + +1.2
98,227 + +0.3
98,227 + -0.3
98,228 - -1.5
98,228 - -3.3
98,228 - -2.2
98,228 - +0.8
98,228 - +0.7
98,363 + +0.4
98,363 + -0.1
98,363 + +0.8
98,363 + +0.4
98,364 - +2.4
98,364 - -0.4
98,470 + Rru_A0085 0.14 -1.0
98,470 + Rru_A0085 0.14 +0.9
98,470 + Rru_A0085 0.14 -3.0
98,470 + Rru_A0085 0.14 -5.0
98,471 - Rru_A0085 0.14 -1.0
98,471 - Rru_A0085 0.14 +0.2
98,529 + Rru_A0085 0.19 +1.5
98,529 + Rru_A0085 0.19 +0.4
98,529 + Rru_A0085 0.19 +0.4
98,529 + Rru_A0085 0.19 -0.5
98,530 - Rru_A0085 0.19 -0.8
98,530 - Rru_A0085 0.19 +0.8
98,530 - Rru_A0085 0.19 -0.8
98,606 + Rru_A0085 0.24 -0.9
98,622 + Rru_A0085 0.26 -3.9
98,622 + Rru_A0085 0.26 -0.1
98,623 - Rru_A0085 0.26 -2.8
98,623 - Rru_A0085 0.26 -0.2
98,623 - Rru_A0085 0.26 -1.6
98,636 + Rru_A0085 0.27 +0.6
98,636 + Rru_A0085 0.27 -0.1
98,637 - Rru_A0085 0.27 +0.2
98,655 + Rru_A0085 0.28 -1.6
98,655 + Rru_A0085 0.28 -4.3
98,656 - Rru_A0085 0.28 -0.7
98,739 + Rru_A0085 0.34 +0.1
98,740 - Rru_A0085 0.34 +0.2
98,741 + Rru_A0085 0.34 +0.7
98,742 - Rru_A0085 0.34 -2.8
98,764 - Rru_A0085 0.36 +0.7
98,854 - Rru_A0085 0.43 -1.1
98,856 + Rru_A0085 0.43 -3.2
98,856 + Rru_A0085 0.43 -0.2
98,856 + Rru_A0085 0.43 -1.0
98,856 + Rru_A0085 0.43 +0.4
98,856 + Rru_A0085 0.43 -0.4
98,857 - Rru_A0085 0.43 -0.0
98,857 - Rru_A0085 0.43 -0.8
98,857 - Rru_A0085 0.43 +2.2
98,857 - Rru_A0085 0.43 -0.7
98,857 - Rru_A0085 0.43 -0.3
98,857 - Rru_A0085 0.43 +1.2
98,857 - Rru_A0085 0.43 -1.4
98,982 + Rru_A0085 0.52 -0.5
98,982 + Rru_A0085 0.52 -0.3
99,066 + Rru_A0085 0.58 -0.7
99,066 + Rru_A0085 0.58 -3.4
99,066 + Rru_A0085 0.58 -0.8
99,067 - Rru_A0085 0.58 +1.0
99,067 - Rru_A0085 0.58 +0.4
99,067 - Rru_A0085 0.58 +0.2
99,067 - Rru_A0085 0.58 -0.3
99,068 + Rru_A0085 0.58 -0.0
99,068 + Rru_A0085 0.58 -0.9
99,068 + Rru_A0085 0.58 -2.2
99,069 - Rru_A0085 0.58 +0.6
99,069 - Rru_A0085 0.58 +0.2
99,129 + Rru_A0085 0.63 +0.3
99,130 - Rru_A0085 0.63 +0.8
99,130 - Rru_A0085 0.63 -1.8

Or see this region's nucleotide sequence