Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03905 and CA265_RS03910 are separated by 13 nucleotides CA265_RS03910 and CA265_RS03915 are separated by 414 nucleotides CA265_RS03915 and CA265_RS03920 are separated by 800 nucleotides
CA265_RS03905: CA265_RS03905 - hypothetical protein, at 921,045 to 921,836
_RS03905
CA265_RS03910: CA265_RS03910 - hypothetical protein, at 921,850 to 922,419
_RS03910
CA265_RS03915: CA265_RS03915 - hypothetical protein, at 922,834 to 924,537
_RS03915
CA265_RS03920: CA265_RS03920 - hypothetical protein, at 925,338 to 928,484
_RS03920
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.842 kb on + strand at 921.974 kb on + strand, within CA265_RS03910 at 921.978 kb on + strand, within CA265_RS03910 at 922.102 kb on + strand, within CA265_RS03910 at 922.112 kb on + strand, within CA265_RS03910 at 922.126 kb on + strand, within CA265_RS03910 at 922.127 kb on - strand, within CA265_RS03910 at 922.170 kb on + strand, within CA265_RS03910 at 922.170 kb on + strand, within CA265_RS03910 at 922.171 kb on - strand, within CA265_RS03910 at 922.201 kb on + strand, within CA265_RS03910 at 922.202 kb on - strand, within CA265_RS03910 at 922.206 kb on + strand, within CA265_RS03910 at 922.206 kb on + strand, within CA265_RS03910 at 922.355 kb on - strand, within CA265_RS03910 at 922.394 kb on + strand at 922.395 kb on - strand at 922.396 kb on + strand at 922.423 kb on + strand at 922.443 kb on + strand at 922.449 kb on + strand at 922.450 kb on - strand at 922.612 kb on - strand at 922.670 kb on - strand at 922.711 kb on - strand at 922.713 kb on + strand at 922.728 kb on - strand at 922.761 kb on + strand at 922.822 kb on + strand at 922.823 kb on - strand at 922.823 kb on - strand at 922.829 kb on + strand at 922.843 kb on - strand at 922.901 kb on - strand at 922.902 kb on + strand at 922.956 kb on + strand at 922.956 kb on + strand at 922.985 kb on - strand at 922.987 kb on - strand at 923.007 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.016 kb on + strand, within CA265_RS03915 at 923.017 kb on - strand, within CA265_RS03915 at 923.053 kb on - strand, within CA265_RS03915 at 923.053 kb on - strand, within CA265_RS03915 at 923.137 kb on - strand, within CA265_RS03915 at 923.141 kb on + strand, within CA265_RS03915 at 923.231 kb on + strand, within CA265_RS03915 at 923.232 kb on - strand, within CA265_RS03915 at 923.247 kb on - strand, within CA265_RS03915 at 923.250 kb on - strand, within CA265_RS03915 at 923.250 kb on - strand, within CA265_RS03915 at 923.291 kb on + strand, within CA265_RS03915 at 923.334 kb on + strand, within CA265_RS03915 at 923.341 kb on - strand, within CA265_RS03915 at 923.386 kb on + strand, within CA265_RS03915 at 923.386 kb on + strand, within CA265_RS03915 at 923.387 kb on - strand, within CA265_RS03915 at 923.480 kb on + strand, within CA265_RS03915 at 923.570 kb on + strand, within CA265_RS03915 at 923.652 kb on + strand, within CA265_RS03915 at 923.664 kb on - strand, within CA265_RS03915 at 923.697 kb on - strand, within CA265_RS03915 at 923.761 kb on + strand, within CA265_RS03915 at 923.954 kb on - strand, within CA265_RS03915 at 924.010 kb on - strand, within CA265_RS03915 at 924.062 kb on - strand, within CA265_RS03915 at 924.062 kb on - strand, within CA265_RS03915 at 924.119 kb on + strand, within CA265_RS03915 at 924.148 kb on - strand, within CA265_RS03915 at 924.184 kb on - strand, within CA265_RS03915 at 924.352 kb on + strand, within CA265_RS03915 at 924.435 kb on + strand at 924.436 kb on - strand at 924.438 kb on + strand at 924.439 kb on - strand at 924.451 kb on + strand at 924.464 kb on - strand at 924.464 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.520 kb on - strand at 924.520 kb on - strand at 924.547 kb on - strand at 924.562 kb on + strand at 924.565 kb on + strand at 924.576 kb on + strand at 924.582 kb on + strand at 924.582 kb on + strand at 924.583 kb on - strand at 924.593 kb on + strand at 924.604 kb on - strand at 924.662 kb on - strand at 924.662 kb on - strand at 924.695 kb on + strand at 924.748 kb on + strand at 924.748 kb on + strand at 924.749 kb on - strand at 924.751 kb on + strand at 924.760 kb on - strand at 924.760 kb on - strand at 924.770 kb on + strand at 924.771 kb on - strand at 924.835 kb on - strand at 924.849 kb on - strand at 924.849 kb on - strand at 924.879 kb on + strand at 924.884 kb on + strand at 924.985 kb on - strand at 925.092 kb on + strand at 925.096 kb on + strand at 925.096 kb on + strand at 925.173 kb on - strand at 925.220 kb on - strand at 925.220 kb on - strand at 925.220 kb on - strand at 925.294 kb on + strand at 925.336 kb on + strand at 925.341 kb on + strand at 925.369 kb on + strand at 925.369 kb on + strand at 925.516 kb on + strand at 925.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 921,842 + +0.4 921,974 + CA265_RS03910 0.22 -1.2 921,978 + CA265_RS03910 0.22 -0.6 922,102 + CA265_RS03910 0.44 -0.3 922,112 + CA265_RS03910 0.46 +0.5 922,126 + CA265_RS03910 0.48 +0.6 922,127 - CA265_RS03910 0.49 -0.9 922,170 + CA265_RS03910 0.56 +0.2 922,170 + CA265_RS03910 0.56 +0.6 922,171 - CA265_RS03910 0.56 +1.1 922,201 + CA265_RS03910 0.62 +0.5 922,202 - CA265_RS03910 0.62 -0.3 922,206 + CA265_RS03910 0.62 -0.0 922,206 + CA265_RS03910 0.62 -0.4 922,355 - CA265_RS03910 0.89 -0.2 922,394 + +0.1 922,395 - +0.5 922,396 + +0.8 922,423 + -0.3 922,443 + +0.9 922,449 + -2.1 922,450 - -0.1 922,612 - +0.1 922,670 - -1.0 922,711 - -0.6 922,713 + -0.9 922,728 - -0.7 922,761 + -1.0 922,822 + +0.5 922,823 - +0.3 922,823 - +0.1 922,829 + -1.0 922,843 - -0.4 922,901 - +0.5 922,902 + +0.5 922,956 + -0.6 922,956 + -0.2 922,985 - -0.7 922,987 - -0.1 923,007 - CA265_RS03915 0.10 +0.5 923,014 - CA265_RS03915 0.11 -0.2 923,014 - CA265_RS03915 0.11 +0.2 923,014 - CA265_RS03915 0.11 -0.5 923,016 + CA265_RS03915 0.11 +0.8 923,017 - CA265_RS03915 0.11 +2.7 923,053 - CA265_RS03915 0.13 +0.0 923,053 - CA265_RS03915 0.13 -0.4 923,137 - CA265_RS03915 0.18 -0.4 923,141 + CA265_RS03915 0.18 +0.2 923,231 + CA265_RS03915 0.23 -0.6 923,232 - CA265_RS03915 0.23 +0.0 923,247 - CA265_RS03915 0.24 -0.2 923,250 - CA265_RS03915 0.24 -1.2 923,250 - CA265_RS03915 0.24 +1.9 923,291 + CA265_RS03915 0.27 -0.7 923,334 + CA265_RS03915 0.29 +0.7 923,341 - CA265_RS03915 0.30 -0.2 923,386 + CA265_RS03915 0.32 +0.9 923,386 + CA265_RS03915 0.32 +1.4 923,387 - CA265_RS03915 0.32 -0.4 923,480 + CA265_RS03915 0.38 +1.4 923,570 + CA265_RS03915 0.43 -1.9 923,652 + CA265_RS03915 0.48 +0.1 923,664 - CA265_RS03915 0.49 +0.7 923,697 - CA265_RS03915 0.51 -0.6 923,761 + CA265_RS03915 0.54 +0.1 923,954 - CA265_RS03915 0.66 -0.2 924,010 - CA265_RS03915 0.69 -1.1 924,062 - CA265_RS03915 0.72 +1.0 924,062 - CA265_RS03915 0.72 +0.8 924,119 + CA265_RS03915 0.75 +0.6 924,148 - CA265_RS03915 0.77 +0.6 924,184 - CA265_RS03915 0.79 +1.1 924,352 + CA265_RS03915 0.89 +0.9 924,435 + +0.2 924,436 - +1.0 924,438 + +0.1 924,439 - +1.1 924,451 + -0.7 924,464 - +0.6 924,464 - -0.6 924,516 - -0.6 924,516 - +0.2 924,520 - -0.7 924,520 - -0.4 924,547 - -0.1 924,562 + -0.2 924,565 + +0.3 924,576 + +0.2 924,582 + +0.3 924,582 + -0.1 924,583 - +0.1 924,593 + +0.3 924,604 - +2.2 924,662 - +0.7 924,662 - +0.1 924,695 + +0.7 924,748 + +0.5 924,748 + +0.1 924,749 - +0.3 924,751 + +1.0 924,760 - +0.2 924,760 - +0.3 924,770 + -0.0 924,771 - +1.1 924,835 - +0.6 924,849 - -0.9 924,849 - +0.8 924,879 + +0.8 924,884 + +0.4 924,985 - -0.2 925,092 + -0.3 925,096 + +1.3 925,096 + +0.5 925,173 - -0.3 925,220 - -0.4 925,220 - +0.5 925,220 - +0.4 925,294 + +0.4 925,336 + -0.7 925,341 + +0.3 925,369 + +0.5 925,369 + -0.2 925,516 + +0.3 925,535 - -0.0
Or see this region's nucleotide sequence