Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20455 and ABZR87_RS20460 are separated by 3 nucleotides ABZR87_RS20460 and ABZR87_RS20465 are separated by 55 nucleotides ABZR87_RS20465 and ABZR87_RS20470 are separated by 56 nucleotides
ABZR87_RS20455: ABZR87_RS20455 - TIGR03364 family FAD-dependent oxidoreductase, at 976,449 to 977,669
_RS20455
ABZR87_RS20460: ABZR87_RS20460 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 977,673 to 978,698
_RS20460
ABZR87_RS20465: ABZR87_RS20465 - phosphonoacetaldehyde hydrolase, at 978,754 to 979,632
_RS20465
ABZR87_RS20470: ABZR87_RS20470 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 979,689 to 981,452
_RS20470
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 977.044 kb on + strand, within ABZR87_RS20455 at 977.204 kb on - strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.264 kb on - strand, within ABZR87_RS20455 at 977.432 kb on - strand, within ABZR87_RS20455 at 977.674 kb on + strand at 977.675 kb on - strand at 977.675 kb on - strand at 977.698 kb on + strand at 977.699 kb on - strand at 977.699 kb on - strand at 977.699 kb on - strand at 977.848 kb on + strand, within ABZR87_RS20460 at 977.848 kb on + strand, within ABZR87_RS20460 at 977.916 kb on - strand, within ABZR87_RS20460 at 977.976 kb on - strand, within ABZR87_RS20460 at 978.089 kb on - strand, within ABZR87_RS20460 at 978.089 kb on - strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.175 kb on + strand, within ABZR87_RS20460 at 978.358 kb on + strand, within ABZR87_RS20460 at 978.358 kb on + strand, within ABZR87_RS20460 at 978.571 kb on + strand, within ABZR87_RS20460 at 978.572 kb on - strand, within ABZR87_RS20460 at 978.572 kb on - strand, within ABZR87_RS20460 at 978.605 kb on - strand at 978.605 kb on - strand at 978.842 kb on + strand, within ABZR87_RS20465 at 978.843 kb on - strand, within ABZR87_RS20465 at 979.027 kb on + strand, within ABZR87_RS20465 at 979.027 kb on + strand, within ABZR87_RS20465 at 979.028 kb on - strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.314 kb on - strand, within ABZR87_RS20465 at 979.314 kb on - strand, within ABZR87_RS20465 at 979.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 976,912 + ABZR87_RS20455 0.38 +1.6 976,912 + ABZR87_RS20455 0.38 +0.6 976,912 + ABZR87_RS20455 0.38 -1.8 976,913 - ABZR87_RS20455 0.38 +1.4 976,913 - ABZR87_RS20455 0.38 -0.4 976,913 - ABZR87_RS20455 0.38 -1.9 976,913 - ABZR87_RS20455 0.38 +1.3 976,913 - ABZR87_RS20455 0.38 -0.0 976,913 - ABZR87_RS20455 0.38 +0.4 977,044 + ABZR87_RS20455 0.49 -0.6 977,204 - ABZR87_RS20455 0.62 +1.2 977,263 + ABZR87_RS20455 0.67 +0.9 977,263 + ABZR87_RS20455 0.67 -0.9 977,263 + ABZR87_RS20455 0.67 -0.7 977,264 - ABZR87_RS20455 0.67 +0.1 977,432 - ABZR87_RS20455 0.81 +0.3 977,674 + -1.6 977,675 - -0.6 977,675 - -1.2 977,698 + -0.3 977,699 - +0.4 977,699 - -1.2 977,699 - +2.1 977,848 + ABZR87_RS20460 0.17 +0.4 977,848 + ABZR87_RS20460 0.17 -0.6 977,916 - ABZR87_RS20460 0.24 +0.3 977,976 - ABZR87_RS20460 0.30 +0.8 978,089 - ABZR87_RS20460 0.41 +1.0 978,089 - ABZR87_RS20460 0.41 -0.3 978,121 + ABZR87_RS20460 0.44 +0.2 978,121 + ABZR87_RS20460 0.44 +0.2 978,121 + ABZR87_RS20460 0.44 -1.8 978,121 + ABZR87_RS20460 0.44 +1.4 978,175 + ABZR87_RS20460 0.49 +1.3 978,358 + ABZR87_RS20460 0.67 +0.7 978,358 + ABZR87_RS20460 0.67 -0.0 978,571 + ABZR87_RS20460 0.88 -2.3 978,572 - ABZR87_RS20460 0.88 -0.5 978,572 - ABZR87_RS20460 0.88 -0.7 978,605 - +0.5 978,605 - -0.6 978,842 + ABZR87_RS20465 0.10 -1.3 978,843 - ABZR87_RS20465 0.10 -2.5 979,027 + ABZR87_RS20465 0.31 -0.0 979,027 + ABZR87_RS20465 0.31 +2.7 979,028 - ABZR87_RS20465 0.31 +0.1 979,203 + ABZR87_RS20465 0.51 -0.8 979,203 + ABZR87_RS20465 0.51 +0.3 979,203 + ABZR87_RS20465 0.51 +0.7 979,313 + ABZR87_RS20465 0.64 -1.1 979,313 + ABZR87_RS20465 0.64 +0.2 979,313 + ABZR87_RS20465 0.64 +0.6 979,313 + ABZR87_RS20465 0.64 +0.8 979,313 + ABZR87_RS20465 0.64 +0.7 979,313 + ABZR87_RS20465 0.64 +0.5 979,313 + ABZR87_RS20465 0.64 -0.1 979,314 - ABZR87_RS20465 0.64 -2.3 979,314 - ABZR87_RS20465 0.64 -0.7 979,668 + -0.1
Or see this region's nucleotide sequence