Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20370

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20365 and ABZR87_RS20370 are separated by 14 nucleotidesABZR87_RS20370 and ABZR87_RS20375 overlap by 7 nucleotides ABZR87_RS20365: ABZR87_RS20365 - cytochrome c, at 957,295 to 958,461 _RS20365 ABZR87_RS20370: ABZR87_RS20370 - ABC transporter ATP-binding protein, at 958,476 to 959,273 _RS20370 ABZR87_RS20375: ABZR87_RS20375 - ABC transporter permease subunit, at 959,267 to 960,304 _RS20375 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 958.052 kb on + strand, within ABZR87_RS20365at 958.053 kb on - strand, within ABZR87_RS20365at 958.053 kb on - strand, within ABZR87_RS20365at 958.053 kb on - strand, within ABZR87_RS20365at 958.477 kb on + strandat 958.477 kb on + strandat 958.478 kb on - strandat 958.478 kb on - strandat 958.966 kb on + strand, within ABZR87_RS20370at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.374 kb on - strand, within ABZR87_RS20375at 959.374 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.415 kb on + strand, within ABZR87_RS20375at 959.492 kb on + strand, within ABZR87_RS20375at 959.493 kb on - strand, within ABZR87_RS20375at 959.493 kb on - strand, within ABZR87_RS20375at 959.583 kb on + strand, within ABZR87_RS20375at 959.584 kb on - strand, within ABZR87_RS20375at 959.586 kb on + strand, within ABZR87_RS20375at 959.676 kb on + strand, within ABZR87_RS20375at 959.694 kb on + strand, within ABZR87_RS20375at 959.695 kb on - strand, within ABZR87_RS20375at 959.695 kb on - strand, within ABZR87_RS20375at 959.764 kb on - strand, within ABZR87_RS20375at 959.854 kb on + strand, within ABZR87_RS20375at 959.854 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.896 kb on - strand, within ABZR87_RS20375at 959.896 kb on - strand, within ABZR87_RS20375

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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958,052 + ABZR87_RS20365 0.65 -0.8
958,053 - ABZR87_RS20365 0.65 +0.7
958,053 - ABZR87_RS20365 0.65 +0.2
958,053 - ABZR87_RS20365 0.65 -0.8
958,477 + -0.9
958,477 + -0.9
958,478 - +0.5
958,478 - -1.5
958,966 + ABZR87_RS20370 0.61 -0.9
959,373 + ABZR87_RS20375 0.10 +0.6
959,373 + ABZR87_RS20375 0.10 -0.5
959,373 + ABZR87_RS20375 0.10 -0.1
959,373 + ABZR87_RS20375 0.10 -1.2
959,373 + ABZR87_RS20375 0.10 +0.4
959,374 - ABZR87_RS20375 0.10 -1.0
959,374 - ABZR87_RS20375 0.10 +1.0
959,386 - ABZR87_RS20375 0.11 +0.6
959,386 - ABZR87_RS20375 0.11 -0.7
959,386 - ABZR87_RS20375 0.11 +0.8
959,415 + ABZR87_RS20375 0.14 -1.7
959,492 + ABZR87_RS20375 0.22 +0.3
959,493 - ABZR87_RS20375 0.22 +0.7
959,493 - ABZR87_RS20375 0.22 +0.6
959,583 + ABZR87_RS20375 0.30 +0.3
959,584 - ABZR87_RS20375 0.31 -0.7
959,586 + ABZR87_RS20375 0.31 -0.1
959,676 + ABZR87_RS20375 0.39 -1.8
959,694 + ABZR87_RS20375 0.41 +1.6
959,695 - ABZR87_RS20375 0.41 -1.2
959,695 - ABZR87_RS20375 0.41 +2.0
959,764 - ABZR87_RS20375 0.48 +2.4
959,854 + ABZR87_RS20375 0.57 -0.8
959,854 + ABZR87_RS20375 0.57 +1.3
959,895 + ABZR87_RS20375 0.61 -2.1
959,895 + ABZR87_RS20375 0.61 +0.4
959,895 + ABZR87_RS20375 0.61 +1.3
959,896 - ABZR87_RS20375 0.61 -2.2
959,896 - ABZR87_RS20375 0.61 -0.8

Or see this region's nucleotide sequence