Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20135 and ABZR87_RS20140 are separated by 25 nucleotides ABZR87_RS20140 and ABZR87_RS20145 are separated by 11 nucleotides
ABZR87_RS20135: ABZR87_RS20135 - M15 family metallopeptidase, at 899,067 to 899,924
_RS20135
ABZR87_RS20140: ABZR87_RS20140 - PAAR domain-containing protein, at 899,950 to 900,219
_RS20140
ABZR87_RS20145: ABZR87_RS20145 - hypothetical protein, at 900,231 to 901,715
_RS20145
Position (kb) 899
900
901 Strain fitness (log2 ratio) -2
-1
0
1
2 at 898.955 kb on + strand at 898.965 kb on + strand at 898.966 kb on - strand at 899.019 kb on + strand at 899.066 kb on + strand at 899.091 kb on + strand at 899.091 kb on + strand at 899.092 kb on - strand at 899.092 kb on - strand at 899.287 kb on + strand, within ABZR87_RS20135 at 899.577 kb on + strand, within ABZR87_RS20135 at 899.578 kb on - strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.803 kb on - strand, within ABZR87_RS20135 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.354 kb on + strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.605 kb on + strand, within ABZR87_RS20145 at 900.605 kb on + strand, within ABZR87_RS20145
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 898,955 + -0.9 898,965 + -0.0 898,966 - +0.6 899,019 + +0.1 899,066 + +1.2 899,091 + +0.6 899,091 + -1.3 899,092 - +1.6 899,092 - -0.9 899,287 + ABZR87_RS20135 0.26 -2.0 899,577 + ABZR87_RS20135 0.59 -0.4 899,578 - ABZR87_RS20135 0.60 -1.6 899,703 + ABZR87_RS20135 0.74 +0.6 899,703 + ABZR87_RS20135 0.74 -1.0 899,703 + ABZR87_RS20135 0.74 -1.7 899,703 + ABZR87_RS20135 0.74 -0.5 899,703 + ABZR87_RS20135 0.74 +0.5 899,703 + ABZR87_RS20135 0.74 +2.0 899,703 + ABZR87_RS20135 0.74 -0.7 899,704 - ABZR87_RS20135 0.74 +0.3 899,704 - ABZR87_RS20135 0.74 +2.0 899,704 - ABZR87_RS20135 0.74 -1.5 899,704 - ABZR87_RS20135 0.74 -1.3 899,704 - ABZR87_RS20135 0.74 -0.2 899,803 - ABZR87_RS20135 0.86 -0.0 900,094 - ABZR87_RS20140 0.53 -0.3 900,094 - ABZR87_RS20140 0.53 -1.0 900,354 + +0.4 900,355 - -1.2 900,355 - -2.1 900,355 - +0.2 900,355 - -1.2 900,355 - -0.1 900,605 + ABZR87_RS20145 0.25 +1.4 900,605 + ABZR87_RS20145 0.25 -1.0
Or see this region's nucleotide sequence