Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18590 and ABZR87_RS18595 overlap by 1 nucleotides ABZR87_RS18595 and ABZR87_RS18600 are separated by 177 nucleotides ABZR87_RS18600 and ABZR87_RS18605 are separated by 49 nucleotides
ABZR87_RS18590: ABZR87_RS18590 - NAD(P)/FAD-dependent oxidoreductase, at 523,674 to 525,296
_RS18590
ABZR87_RS18595: ABZR87_RS18595 - polyamine aminopropyltransferase, at 525,296 to 526,873
_RS18595
ABZR87_RS18600: ABZR87_RS18600 - DUF350 domain-containing protein, at 527,051 to 527,449
_RS18600
ABZR87_RS18605: ABZR87_RS18605 - SPFH domain-containing protein, at 527,499 to 528,542
_RS18605
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 524.488 kb on + strand, within ABZR87_RS18590 at 524.488 kb on + strand, within ABZR87_RS18590 at 524.489 kb on - strand, within ABZR87_RS18590 at 524.533 kb on + strand, within ABZR87_RS18590 at 524.551 kb on + strand, within ABZR87_RS18590 at 524.626 kb on - strand, within ABZR87_RS18590 at 524.762 kb on + strand, within ABZR87_RS18590 at 524.763 kb on - strand, within ABZR87_RS18590 at 524.947 kb on + strand, within ABZR87_RS18590 at 524.947 kb on + strand, within ABZR87_RS18590 at 524.948 kb on - strand, within ABZR87_RS18590 at 524.948 kb on - strand, within ABZR87_RS18590 at 525.021 kb on + strand, within ABZR87_RS18590 at 525.021 kb on + strand, within ABZR87_RS18590 at 525.021 kb on + strand, within ABZR87_RS18590 at 525.021 kb on + strand, within ABZR87_RS18590 at 525.022 kb on - strand, within ABZR87_RS18590 at 525.022 kb on - strand, within ABZR87_RS18590 at 525.534 kb on + strand, within ABZR87_RS18595 at 525.535 kb on - strand, within ABZR87_RS18595 at 525.535 kb on - strand, within ABZR87_RS18595 at 525.585 kb on + strand, within ABZR87_RS18595 at 525.585 kb on + strand, within ABZR87_RS18595 at 525.585 kb on + strand, within ABZR87_RS18595 at 525.586 kb on - strand, within ABZR87_RS18595 at 525.681 kb on + strand, within ABZR87_RS18595 at 525.682 kb on - strand, within ABZR87_RS18595 at 525.872 kb on + strand, within ABZR87_RS18595 at 525.907 kb on - strand, within ABZR87_RS18595 at 526.012 kb on - strand, within ABZR87_RS18595 at 526.056 kb on + strand, within ABZR87_RS18595 at 526.057 kb on - strand, within ABZR87_RS18595 at 526.101 kb on + strand, within ABZR87_RS18595 at 526.102 kb on - strand, within ABZR87_RS18595 at 526.240 kb on + strand, within ABZR87_RS18595 at 526.240 kb on + strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.241 kb on - strand, within ABZR87_RS18595 at 526.257 kb on - strand, within ABZR87_RS18595 at 526.300 kb on + strand, within ABZR87_RS18595 at 526.395 kb on + strand, within ABZR87_RS18595 at 526.396 kb on - strand, within ABZR87_RS18595 at 526.516 kb on - strand, within ABZR87_RS18595 at 526.553 kb on + strand, within ABZR87_RS18595 at 526.553 kb on + strand, within ABZR87_RS18595 at 526.554 kb on - strand, within ABZR87_RS18595 at 526.648 kb on - strand, within ABZR87_RS18595 at 526.648 kb on - strand, within ABZR87_RS18595 at 526.687 kb on - strand, within ABZR87_RS18595 at 526.687 kb on - strand, within ABZR87_RS18595 at 526.734 kb on + strand at 526.764 kb on + strand at 526.764 kb on + strand at 526.765 kb on - strand at 526.765 kb on - strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 526.846 kb on - strand at 527.013 kb on + strand at 527.015 kb on + strand at 527.015 kb on + strand at 527.016 kb on - strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.028 kb on + strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.029 kb on - strand at 527.032 kb on + strand at 527.033 kb on - strand at 527.033 kb on - strand at 527.081 kb on + strand at 527.135 kb on + strand, within ABZR87_RS18600 at 527.136 kb on - strand, within ABZR87_RS18600 at 527.136 kb on - strand, within ABZR87_RS18600 at 527.186 kb on - strand, within ABZR87_RS18600 at 527.332 kb on + strand, within ABZR87_RS18600 at 527.332 kb on + strand, within ABZR87_RS18600 at 527.332 kb on + strand, within ABZR87_RS18600 at 527.333 kb on - strand, within ABZR87_RS18600 at 527.351 kb on + strand, within ABZR87_RS18600 at 527.377 kb on + strand, within ABZR87_RS18600 at 527.378 kb on - strand, within ABZR87_RS18600 at 527.389 kb on + strand, within ABZR87_RS18600 at 527.390 kb on - strand, within ABZR87_RS18600 at 527.680 kb on + strand, within ABZR87_RS18605 at 527.680 kb on + strand, within ABZR87_RS18605 at 527.681 kb on - strand, within ABZR87_RS18605 at 527.733 kb on + strand, within ABZR87_RS18605 at 527.733 kb on + strand, within ABZR87_RS18605 at 527.734 kb on - strand, within ABZR87_RS18605 at 527.784 kb on + strand, within ABZR87_RS18605 at 527.785 kb on - strand, within ABZR87_RS18605 at 527.785 kb on - strand, within ABZR87_RS18605 at 527.787 kb on + strand, within ABZR87_RS18605 at 527.788 kb on - strand, within ABZR87_RS18605
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 524,488 + ABZR87_RS18590 0.50 -2.9 524,488 + ABZR87_RS18590 0.50 +0.7 524,489 - ABZR87_RS18590 0.50 -1.3 524,533 + ABZR87_RS18590 0.53 -0.2 524,551 + ABZR87_RS18590 0.54 -0.9 524,626 - ABZR87_RS18590 0.59 -0.9 524,762 + ABZR87_RS18590 0.67 -0.7 524,763 - ABZR87_RS18590 0.67 +1.2 524,947 + ABZR87_RS18590 0.78 +0.9 524,947 + ABZR87_RS18590 0.78 +0.1 524,948 - ABZR87_RS18590 0.78 +3.4 524,948 - ABZR87_RS18590 0.78 +1.4 525,021 + ABZR87_RS18590 0.83 -0.3 525,021 + ABZR87_RS18590 0.83 -0.8 525,021 + ABZR87_RS18590 0.83 +0.4 525,021 + ABZR87_RS18590 0.83 +0.1 525,022 - ABZR87_RS18590 0.83 +0.9 525,022 - ABZR87_RS18590 0.83 +1.8 525,534 + ABZR87_RS18595 0.15 +0.5 525,535 - ABZR87_RS18595 0.15 -1.9 525,535 - ABZR87_RS18595 0.15 +0.1 525,585 + ABZR87_RS18595 0.18 +0.4 525,585 + ABZR87_RS18595 0.18 +0.0 525,585 + ABZR87_RS18595 0.18 +0.1 525,586 - ABZR87_RS18595 0.18 -0.9 525,681 + ABZR87_RS18595 0.24 -1.4 525,682 - ABZR87_RS18595 0.24 -2.4 525,872 + ABZR87_RS18595 0.37 +0.0 525,907 - ABZR87_RS18595 0.39 +3.0 526,012 - ABZR87_RS18595 0.45 -0.5 526,056 + ABZR87_RS18595 0.48 +1.4 526,057 - ABZR87_RS18595 0.48 -1.9 526,101 + ABZR87_RS18595 0.51 +0.5 526,102 - ABZR87_RS18595 0.51 -0.1 526,240 + ABZR87_RS18595 0.60 -0.2 526,240 + ABZR87_RS18595 0.60 -0.5 526,241 - ABZR87_RS18595 0.60 +0.7 526,241 - ABZR87_RS18595 0.60 -0.3 526,241 - ABZR87_RS18595 0.60 -0.5 526,241 - ABZR87_RS18595 0.60 -0.3 526,241 - ABZR87_RS18595 0.60 -1.6 526,241 - ABZR87_RS18595 0.60 -0.7 526,257 - ABZR87_RS18595 0.61 -1.2 526,300 + ABZR87_RS18595 0.64 -1.6 526,395 + ABZR87_RS18595 0.70 +0.2 526,396 - ABZR87_RS18595 0.70 +0.7 526,516 - ABZR87_RS18595 0.77 +1.0 526,553 + ABZR87_RS18595 0.80 +0.4 526,553 + ABZR87_RS18595 0.80 +0.2 526,554 - ABZR87_RS18595 0.80 -0.3 526,648 - ABZR87_RS18595 0.86 -0.0 526,648 - ABZR87_RS18595 0.86 +0.4 526,687 - ABZR87_RS18595 0.88 -0.1 526,687 - ABZR87_RS18595 0.88 -0.5 526,734 + -0.5 526,764 + +1.8 526,764 + -1.4 526,765 - +0.1 526,765 - +0.4 526,845 + -0.2 526,845 + +1.8 526,845 + +2.4 526,845 + +0.7 526,845 + -1.3 526,845 + +0.0 526,846 - +0.6 526,846 - +2.9 526,846 - -0.3 526,846 - -0.7 526,846 - +1.5 526,846 - -0.9 526,846 - -0.4 526,846 - +0.0 526,846 - -1.2 527,013 + -0.3 527,015 + +1.7 527,015 + +1.3 527,016 - -0.2 527,028 + +0.2 527,028 + -0.6 527,028 + -0.9 527,028 + +1.2 527,028 + -0.3 527,028 + -0.3 527,028 + -1.4 527,028 + +1.9 527,028 + +0.1 527,028 + -0.8 527,028 + +0.3 527,028 + +0.8 527,028 + +0.1 527,029 - -1.4 527,029 - -0.7 527,029 - +0.2 527,029 - +1.6 527,029 - -1.6 527,029 - +1.0 527,029 - +0.4 527,029 - -1.1 527,029 - -1.3 527,032 + +0.9 527,033 - -2.1 527,033 - +1.3 527,081 + -1.2 527,135 + ABZR87_RS18600 0.21 +0.2 527,136 - ABZR87_RS18600 0.21 +1.7 527,136 - ABZR87_RS18600 0.21 +0.5 527,186 - ABZR87_RS18600 0.34 -0.8 527,332 + ABZR87_RS18600 0.70 +2.5 527,332 + ABZR87_RS18600 0.70 +0.4 527,332 + ABZR87_RS18600 0.70 -0.8 527,333 - ABZR87_RS18600 0.71 +0.4 527,351 + ABZR87_RS18600 0.75 +1.3 527,377 + ABZR87_RS18600 0.82 +1.6 527,378 - ABZR87_RS18600 0.82 -0.1 527,389 + ABZR87_RS18600 0.85 -0.1 527,390 - ABZR87_RS18600 0.85 -0.1 527,680 + ABZR87_RS18605 0.17 +0.3 527,680 + ABZR87_RS18605 0.17 +1.4 527,681 - ABZR87_RS18605 0.17 -0.1 527,733 + ABZR87_RS18605 0.22 +0.7 527,733 + ABZR87_RS18605 0.22 -1.1 527,734 - ABZR87_RS18605 0.23 +0.3 527,784 + ABZR87_RS18605 0.27 -1.3 527,785 - ABZR87_RS18605 0.27 -0.5 527,785 - ABZR87_RS18605 0.27 -1.2 527,787 + ABZR87_RS18605 0.28 +1.7 527,788 - ABZR87_RS18605 0.28 -1.1
Or see this region's nucleotide sequence