Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18560 and ABZR87_RS18565 are separated by 124 nucleotides ABZR87_RS18565 and ABZR87_RS18570 are separated by 83 nucleotides ABZR87_RS18570 and ABZR87_RS18575 are separated by 17 nucleotides
ABZR87_RS18560: ABZR87_RS18560 - NmrA family NAD(P)-binding protein, at 519,259 to 520,149
_RS18560
ABZR87_RS18565: ABZR87_RS18565 - hypothetical protein, at 520,274 to 521,059
_RS18565
ABZR87_RS18570: ABZR87_RS18570 - hypothetical protein, at 521,143 to 521,697
_RS18570
ABZR87_RS18575: ABZR87_RS18575 - DUF1304 domain-containing protein, at 521,715 to 522,077
_RS18575
Position (kb) 520
521
522 Strain fitness (log2 ratio) -2
-1
0
1 at 519.950 kb on + strand, within ABZR87_RS18560 at 520.027 kb on + strand, within ABZR87_RS18560 at 520.028 kb on - strand, within ABZR87_RS18560 at 520.164 kb on + strand at 520.187 kb on + strand at 520.188 kb on - strand at 520.217 kb on - strand at 520.244 kb on + strand at 520.244 kb on + strand at 520.244 kb on + strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.245 kb on - strand at 520.373 kb on + strand, within ABZR87_RS18565 at 520.374 kb on - strand, within ABZR87_RS18565 at 520.374 kb on - strand, within ABZR87_RS18565 at 520.374 kb on - strand, within ABZR87_RS18565 at 520.374 kb on - strand, within ABZR87_RS18565 at 520.376 kb on - strand, within ABZR87_RS18565 at 520.426 kb on + strand, within ABZR87_RS18565 at 520.426 kb on + strand, within ABZR87_RS18565 at 520.512 kb on - strand, within ABZR87_RS18565 at 520.544 kb on + strand, within ABZR87_RS18565 at 520.545 kb on - strand, within ABZR87_RS18565 at 520.545 kb on - strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.580 kb on + strand, within ABZR87_RS18565 at 520.581 kb on - strand, within ABZR87_RS18565 at 520.710 kb on + strand, within ABZR87_RS18565 at 520.728 kb on - strand, within ABZR87_RS18565 at 520.728 kb on - strand, within ABZR87_RS18565 at 520.728 kb on - strand, within ABZR87_RS18565 at 520.728 kb on - strand, within ABZR87_RS18565 at 520.728 kb on - strand, within ABZR87_RS18565 at 520.843 kb on + strand, within ABZR87_RS18565 at 520.878 kb on - strand, within ABZR87_RS18565 at 520.878 kb on - strand, within ABZR87_RS18565 at 520.878 kb on - strand, within ABZR87_RS18565 at 520.939 kb on - strand, within ABZR87_RS18565 at 521.087 kb on + strand at 521.087 kb on + strand at 521.389 kb on + strand, within ABZR87_RS18570 at 521.486 kb on + strand, within ABZR87_RS18570 at 521.487 kb on - strand, within ABZR87_RS18570 at 521.487 kb on - strand, within ABZR87_RS18570 at 521.519 kb on + strand, within ABZR87_RS18570 at 521.531 kb on - strand, within ABZR87_RS18570 at 521.627 kb on - strand, within ABZR87_RS18570 at 521.688 kb on + strand at 521.689 kb on - strand at 521.689 kb on - strand at 521.911 kb on + strand, within ABZR87_RS18575 at 521.912 kb on - strand, within ABZR87_RS18575 at 521.912 kb on - strand, within ABZR87_RS18575 at 522.013 kb on - strand, within ABZR87_RS18575 at 522.022 kb on + strand, within ABZR87_RS18575 at 522.022 kb on + strand, within ABZR87_RS18575 at 522.022 kb on + strand, within ABZR87_RS18575 at 522.022 kb on + strand, within ABZR87_RS18575 at 522.023 kb on - strand, within ABZR87_RS18575 at 522.023 kb on - strand, within ABZR87_RS18575 at 522.023 kb on - strand, within ABZR87_RS18575 at 522.023 kb on - strand, within ABZR87_RS18575 at 522.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 519,950 + ABZR87_RS18560 0.78 +0.5 520,027 + ABZR87_RS18560 0.86 -1.8 520,028 - ABZR87_RS18560 0.86 -0.3 520,164 + -0.1 520,187 + +1.6 520,188 - -0.7 520,217 - -1.9 520,244 + +0.4 520,244 + +0.6 520,244 + +0.3 520,245 - +1.0 520,245 - -0.2 520,245 - -0.8 520,245 - -1.3 520,245 - -2.1 520,245 - -1.8 520,245 - -0.1 520,373 + ABZR87_RS18565 0.13 -0.3 520,374 - ABZR87_RS18565 0.13 -0.4 520,374 - ABZR87_RS18565 0.13 -1.9 520,374 - ABZR87_RS18565 0.13 +0.3 520,374 - ABZR87_RS18565 0.13 -1.6 520,376 - ABZR87_RS18565 0.13 -0.7 520,426 + ABZR87_RS18565 0.19 -0.3 520,426 + ABZR87_RS18565 0.19 -1.2 520,512 - ABZR87_RS18565 0.30 +0.4 520,544 + ABZR87_RS18565 0.34 -0.3 520,545 - ABZR87_RS18565 0.34 -0.5 520,545 - ABZR87_RS18565 0.34 +1.3 520,580 + ABZR87_RS18565 0.39 +0.7 520,580 + ABZR87_RS18565 0.39 -1.5 520,580 + ABZR87_RS18565 0.39 -0.3 520,580 + ABZR87_RS18565 0.39 -0.2 520,580 + ABZR87_RS18565 0.39 -1.3 520,580 + ABZR87_RS18565 0.39 -1.9 520,581 - ABZR87_RS18565 0.39 +0.6 520,710 + ABZR87_RS18565 0.55 -0.7 520,728 - ABZR87_RS18565 0.58 -0.8 520,728 - ABZR87_RS18565 0.58 -1.5 520,728 - ABZR87_RS18565 0.58 +0.5 520,728 - ABZR87_RS18565 0.58 -0.4 520,728 - ABZR87_RS18565 0.58 -2.2 520,843 + ABZR87_RS18565 0.72 -0.9 520,878 - ABZR87_RS18565 0.77 +1.5 520,878 - ABZR87_RS18565 0.77 -1.0 520,878 - ABZR87_RS18565 0.77 +0.7 520,939 - ABZR87_RS18565 0.85 +0.4 521,087 + -0.7 521,087 + -1.5 521,389 + ABZR87_RS18570 0.44 +0.0 521,486 + ABZR87_RS18570 0.62 -0.0 521,487 - ABZR87_RS18570 0.62 +0.3 521,487 - ABZR87_RS18570 0.62 -1.6 521,519 + ABZR87_RS18570 0.68 -0.3 521,531 - ABZR87_RS18570 0.70 +0.4 521,627 - ABZR87_RS18570 0.87 -0.7 521,688 + -0.0 521,689 - +0.3 521,689 - +1.6 521,911 + ABZR87_RS18575 0.54 -0.1 521,912 - ABZR87_RS18575 0.54 -1.4 521,912 - ABZR87_RS18575 0.54 +0.9 522,013 - ABZR87_RS18575 0.82 +0.5 522,022 + ABZR87_RS18575 0.85 +0.2 522,022 + ABZR87_RS18575 0.85 -0.2 522,022 + ABZR87_RS18575 0.85 -0.6 522,022 + ABZR87_RS18575 0.85 +0.1 522,023 - ABZR87_RS18575 0.85 -2.2 522,023 - ABZR87_RS18575 0.85 -0.3 522,023 - ABZR87_RS18575 0.85 -1.4 522,023 - ABZR87_RS18575 0.85 -0.5 522,050 - +0.1
Or see this region's nucleotide sequence