Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18335 and ABZR87_RS18340 are separated by 217 nucleotides ABZR87_RS18340 and ABZR87_RS18345 are separated by 278 nucleotides
ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783
_RS18330
ABZR87_RS18335: ABZR87_RS18335 - GntR family transcriptional regulator, at 479,780 to 480,565
_RS18335
ABZR87_RS18340: ABZR87_RS18340 - helix-turn-helix domain-containing protein, at 480,783 to 481,718
_RS18340
ABZR87_RS18345: ABZR87_RS18345 - ABC transporter substrate-binding protein, at 481,997 to 482,983
_RS18345
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 479.851 kb on - strand at 480.474 kb on + strand, within ABZR87_RS18335 at 480.474 kb on + strand, within ABZR87_RS18335 at 480.475 kb on - strand, within ABZR87_RS18335 at 480.553 kb on + strand at 480.603 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.639 kb on - strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.677 kb on + strand at 480.678 kb on - strand at 480.892 kb on - strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.937 kb on - strand, within ABZR87_RS18340 at 480.937 kb on - strand, within ABZR87_RS18340 at 480.972 kb on + strand, within ABZR87_RS18340 at 481.056 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.510 kb on - strand, within ABZR87_RS18340 at 481.815 kb on - strand at 481.834 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.858 kb on - strand at 481.922 kb on + strand at 481.923 kb on - strand at 481.923 kb on - strand at 481.923 kb on - strand at 481.960 kb on - strand at 482.034 kb on + strand at 482.034 kb on + strand at 482.035 kb on - strand at 482.035 kb on - strand at 482.264 kb on + strand, within ABZR87_RS18345 at 482.265 kb on - strand, within ABZR87_RS18345 at 482.405 kb on + strand, within ABZR87_RS18345 at 482.406 kb on - strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.687 kb on + strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 479,851 - -0.3 480,474 + ABZR87_RS18335 0.88 -1.5 480,474 + ABZR87_RS18335 0.88 +0.9 480,475 - ABZR87_RS18335 0.88 -0.5 480,553 + +2.5 480,603 + -0.2 480,616 + -1.4 480,616 + -0.4 480,616 + -2.1 480,617 - +0.1 480,617 - -1.1 480,617 - -0.8 480,617 - -0.5 480,617 - +0.9 480,639 - -0.7 480,675 + -1.9 480,675 + +0.1 480,675 + -1.0 480,675 + -1.6 480,676 - -0.2 480,676 - -0.9 480,676 - -0.9 480,677 + -0.1 480,678 - -1.4 480,892 - ABZR87_RS18340 0.12 +0.7 480,936 + ABZR87_RS18340 0.16 -1.2 480,936 + ABZR87_RS18340 0.16 -0.2 480,936 + ABZR87_RS18340 0.16 +0.4 480,936 + ABZR87_RS18340 0.16 +0.1 480,937 - ABZR87_RS18340 0.16 -1.3 480,937 - ABZR87_RS18340 0.16 +1.7 480,972 + ABZR87_RS18340 0.20 -2.2 481,056 + ABZR87_RS18340 0.29 +0.3 481,509 + ABZR87_RS18340 0.78 -0.3 481,509 + ABZR87_RS18340 0.78 +0.3 481,510 - ABZR87_RS18340 0.78 -0.3 481,815 - +0.3 481,834 - +0.5 481,858 - +1.3 481,858 - -1.4 481,858 - +0.1 481,858 - -0.6 481,922 + -0.2 481,923 - +1.9 481,923 - -0.2 481,923 - -0.9 481,960 - +0.8 482,034 + -0.6 482,034 + +1.1 482,035 - +1.6 482,035 - +3.0 482,264 + ABZR87_RS18345 0.27 +1.3 482,265 - ABZR87_RS18345 0.27 +0.4 482,405 + ABZR87_RS18345 0.41 +0.7 482,406 - ABZR87_RS18345 0.41 -0.6 482,585 + ABZR87_RS18345 0.60 -0.5 482,585 + ABZR87_RS18345 0.60 +0.6 482,585 + ABZR87_RS18345 0.60 +0.3 482,687 + ABZR87_RS18345 0.70 -1.3 482,688 - ABZR87_RS18345 0.70 +1.3 482,688 - ABZR87_RS18345 0.70 +0.7
Or see this region's nucleotide sequence