Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18075 and ABZR87_RS18080 overlap by 4 nucleotides ABZR87_RS18080 and ABZR87_RS18085 overlap by 38 nucleotides ABZR87_RS18085 and ABZR87_RS18090 overlap by 4 nucleotides ABZR87_RS18090 and ABZR87_RS18095 overlap by 19 nucleotides
ABZR87_RS18075: ABZR87_RS18075 - type III secretion system export apparatus subunit SctT, at 420,937 to 421,737
_RS18075
ABZR87_RS18080: ABZR87_RS18080 - hypothetical protein, at 421,734 to 422,246
_RS18080
ABZR87_RS18085: ABZR87_RS18085 - type III secretion system ATPase SctN, at 422,209 to 423,633
_RS18085
ABZR87_RS18090: ABZR87_RS18090 - type III secretion system stator protein SctL, at 423,630 to 424,244
_RS18090
ABZR87_RS18095: ABZR87_RS18095 - hypothetical protein, at 424,226 to 424,900
_RS18095
Position (kb) 422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 421.440 kb on - strand, within ABZR87_RS18075 at 421.994 kb on + strand, within ABZR87_RS18080 at 421.995 kb on - strand, within ABZR87_RS18080 at 422.018 kb on - strand, within ABZR87_RS18080 at 422.180 kb on + strand, within ABZR87_RS18080 at 422.254 kb on + strand at 422.254 kb on + strand at 422.255 kb on - strand at 422.255 kb on - strand at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.526 kb on - strand, within ABZR87_RS18085 at 422.623 kb on + strand, within ABZR87_RS18085 at 422.624 kb on - strand, within ABZR87_RS18085 at 422.636 kb on + strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.831 kb on + strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 423.180 kb on - strand, within ABZR87_RS18085 at 423.378 kb on - strand, within ABZR87_RS18085 at 423.562 kb on + strand at 423.563 kb on - strand at 423.563 kb on - strand at 423.571 kb on + strand at 423.572 kb on - strand at 423.572 kb on - strand at 423.850 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.085 kb on - strand, within ABZR87_RS18090 at 424.168 kb on + strand, within ABZR87_RS18090 at 424.464 kb on + strand, within ABZR87_RS18095 at 424.631 kb on + strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 421,440 - ABZR87_RS18075 0.63 -0.1 421,994 + ABZR87_RS18080 0.51 -0.7 421,995 - ABZR87_RS18080 0.51 +0.3 422,018 - ABZR87_RS18080 0.55 -0.2 422,180 + ABZR87_RS18080 0.87 -0.5 422,254 + +0.4 422,254 + -0.7 422,255 - +0.4 422,255 - -1.4 422,384 + ABZR87_RS18085 0.12 +0.5 422,384 + ABZR87_RS18085 0.12 +1.3 422,384 + ABZR87_RS18085 0.12 -1.9 422,385 - ABZR87_RS18085 0.12 -1.7 422,385 - ABZR87_RS18085 0.12 -2.4 422,385 - ABZR87_RS18085 0.12 +0.2 422,526 - ABZR87_RS18085 0.22 -0.8 422,623 + ABZR87_RS18085 0.29 +0.1 422,624 - ABZR87_RS18085 0.29 +2.1 422,636 + ABZR87_RS18085 0.30 +0.4 422,637 - ABZR87_RS18085 0.30 +0.3 422,637 - ABZR87_RS18085 0.30 -0.5 422,831 + ABZR87_RS18085 0.44 -0.3 422,832 - ABZR87_RS18085 0.44 -1.1 422,832 - ABZR87_RS18085 0.44 +0.1 422,832 - ABZR87_RS18085 0.44 -0.7 423,180 - ABZR87_RS18085 0.68 -1.1 423,378 - ABZR87_RS18085 0.82 +0.3 423,562 + +0.8 423,563 - +0.4 423,563 - +0.3 423,571 + +0.3 423,572 - +1.8 423,572 - +0.3 423,850 + ABZR87_RS18090 0.36 -0.4 424,012 + ABZR87_RS18090 0.62 +2.4 424,012 + ABZR87_RS18090 0.62 +0.3 424,013 - ABZR87_RS18090 0.62 -0.3 424,013 - ABZR87_RS18090 0.62 -1.8 424,013 - ABZR87_RS18090 0.62 +1.1 424,085 - ABZR87_RS18090 0.74 +1.2 424,168 + ABZR87_RS18090 0.87 +0.4 424,464 + ABZR87_RS18095 0.35 -0.0 424,631 + ABZR87_RS18095 0.60 +1.1 424,632 - ABZR87_RS18095 0.60 +0.3 424,632 - ABZR87_RS18095 0.60 +1.8 424,632 - ABZR87_RS18095 0.60 -1.5 424,632 - ABZR87_RS18095 0.60 -1.3
Or see this region's nucleotide sequence