Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18070 and ABZR87_RS18075 overlap by 4 nucleotides ABZR87_RS18075 and ABZR87_RS18080 overlap by 4 nucleotides ABZR87_RS18080 and ABZR87_RS18085 overlap by 38 nucleotides
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
ABZR87_RS18075: ABZR87_RS18075 - type III secretion system export apparatus subunit SctT, at 420,937 to 421,737
_RS18075
ABZR87_RS18080: ABZR87_RS18080 - hypothetical protein, at 421,734 to 422,246
_RS18080
ABZR87_RS18085: ABZR87_RS18085 - type III secretion system ATPase SctN, at 422,209 to 423,633
_RS18085
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 420.838 kb on + strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.854 kb on + strand at 420.855 kb on - strand at 421.022 kb on + strand, within ABZR87_RS18075 at 421.022 kb on + strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.440 kb on - strand, within ABZR87_RS18075 at 421.994 kb on + strand, within ABZR87_RS18080 at 421.995 kb on - strand, within ABZR87_RS18080 at 422.018 kb on - strand, within ABZR87_RS18080 at 422.180 kb on + strand, within ABZR87_RS18080 at 422.254 kb on + strand at 422.254 kb on + strand at 422.255 kb on - strand at 422.255 kb on - strand at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.526 kb on - strand, within ABZR87_RS18085 at 422.623 kb on + strand, within ABZR87_RS18085 at 422.624 kb on - strand, within ABZR87_RS18085 at 422.636 kb on + strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.831 kb on + strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 423.180 kb on - strand, within ABZR87_RS18085
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 420,838 + +0.4 420,839 - +0.7 420,839 - +0.1 420,854 + -0.9 420,855 - -1.0 421,022 + ABZR87_RS18075 0.11 +0.2 421,022 + ABZR87_RS18075 0.11 +2.2 421,023 - ABZR87_RS18075 0.11 -1.7 421,023 - ABZR87_RS18075 0.11 -0.0 421,023 - ABZR87_RS18075 0.11 -0.6 421,023 - ABZR87_RS18075 0.11 +1.0 421,440 - ABZR87_RS18075 0.63 -0.1 421,994 + ABZR87_RS18080 0.51 -0.7 421,995 - ABZR87_RS18080 0.51 +0.3 422,018 - ABZR87_RS18080 0.55 -0.2 422,180 + ABZR87_RS18080 0.87 -0.5 422,254 + +0.4 422,254 + -0.7 422,255 - +0.4 422,255 - -1.4 422,384 + ABZR87_RS18085 0.12 +0.5 422,384 + ABZR87_RS18085 0.12 +1.3 422,384 + ABZR87_RS18085 0.12 -1.9 422,385 - ABZR87_RS18085 0.12 -1.7 422,385 - ABZR87_RS18085 0.12 -2.4 422,385 - ABZR87_RS18085 0.12 +0.2 422,526 - ABZR87_RS18085 0.22 -0.8 422,623 + ABZR87_RS18085 0.29 +0.1 422,624 - ABZR87_RS18085 0.29 +2.1 422,636 + ABZR87_RS18085 0.30 +0.4 422,637 - ABZR87_RS18085 0.30 +0.3 422,637 - ABZR87_RS18085 0.30 -0.5 422,831 + ABZR87_RS18085 0.44 -0.3 422,832 - ABZR87_RS18085 0.44 -1.1 422,832 - ABZR87_RS18085 0.44 +0.1 422,832 - ABZR87_RS18085 0.44 -0.7 423,180 - ABZR87_RS18085 0.68 -1.1
Or see this region's nucleotide sequence