Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides ABZR87_RS18040 and ABZR87_RS18045 are separated by 68 nucleotides ABZR87_RS18045 and ABZR87_RS18050 are separated by 235 nucleotides ABZR87_RS18050 and ABZR87_RS18055 are separated by 21 nucleotides
ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553
_RS18035
ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323
_RS18040
ABZR87_RS18045: ABZR87_RS18045 - MBL fold metallo-hydrolase, at 405,392 to 406,483
_RS18045
ABZR87_RS18050: ABZR87_RS18050 - Crp/Fnr family transcriptional regulator, at 406,719 to 407,450
_RS18050
ABZR87_RS18055: ABZR87_RS18055 - VirK family protein, at 407,472 to 407,987
_RS18055
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 404.548 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.596 kb on + strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.790 kb on + strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.018 kb on + strand, within ABZR87_RS18040 at 405.019 kb on - strand, within ABZR87_RS18040 at 405.183 kb on + strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.257 kb on + strand at 405.257 kb on + strand at 405.708 kb on + strand, within ABZR87_RS18045 at 405.781 kb on - strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.093 kb on - strand, within ABZR87_RS18045 at 406.419 kb on + strand at 406.551 kb on + strand at 406.551 kb on + strand at 406.551 kb on + strand at 406.556 kb on + strand at 406.556 kb on + strand at 406.557 kb on - strand at 406.557 kb on - strand at 406.564 kb on + strand at 406.564 kb on + strand at 406.777 kb on - strand at 406.777 kb on - strand at 406.918 kb on - strand, within ABZR87_RS18050 at 407.394 kb on + strand at 407.395 kb on - strand at 407.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 404,548 + -0.4 404,591 + +1.4 404,591 + +2.3 404,591 + +0.5 404,591 + +2.9 404,591 + -0.0 404,591 + -0.3 404,592 - +2.5 404,592 - +1.9 404,592 - +1.5 404,592 - +2.3 404,592 - +2.8 404,592 - +1.8 404,592 - +1.9 404,592 - +1.6 404,592 - +2.4 404,592 - +1.8 404,592 - +2.3 404,592 - +3.6 404,595 + +2.7 404,595 + +1.9 404,595 + +1.8 404,595 + +1.9 404,595 + +3.0 404,595 + +2.5 404,595 + +4.2 404,596 + +3.1 404,596 - +2.4 404,596 - +2.4 404,596 - +2.4 404,596 - -0.8 404,596 - +3.7 404,596 - +2.6 404,596 - +2.8 404,596 - +2.1 404,596 - +0.7 404,596 - +2.6 404,596 - +1.6 404,640 + ABZR87_RS18040 0.10 +2.2 404,640 + ABZR87_RS18040 0.10 +2.4 404,640 + ABZR87_RS18040 0.10 +2.6 404,641 - ABZR87_RS18040 0.10 +3.4 404,641 - ABZR87_RS18040 0.10 +2.8 404,641 - ABZR87_RS18040 0.10 +3.1 404,641 - ABZR87_RS18040 0.10 +1.7 404,641 - ABZR87_RS18040 0.10 +2.1 404,790 + ABZR87_RS18040 0.30 +1.3 404,805 - ABZR87_RS18040 0.32 +2.1 404,805 - ABZR87_RS18040 0.32 +1.9 404,973 + ABZR87_RS18040 0.54 +2.4 404,973 + ABZR87_RS18040 0.54 +2.5 405,015 + ABZR87_RS18040 0.59 +2.0 405,015 + ABZR87_RS18040 0.59 +2.8 405,015 + ABZR87_RS18040 0.59 +1.9 405,016 - ABZR87_RS18040 0.60 +1.3 405,016 - ABZR87_RS18040 0.60 +1.3 405,016 - ABZR87_RS18040 0.60 +2.2 405,018 + ABZR87_RS18040 0.60 +2.2 405,019 - ABZR87_RS18040 0.60 +0.8 405,183 + ABZR87_RS18040 0.81 +2.3 405,184 - ABZR87_RS18040 0.82 +1.8 405,184 - ABZR87_RS18040 0.82 +2.5 405,257 + +1.1 405,257 + +2.5 405,708 + ABZR87_RS18045 0.29 -2.8 405,781 - ABZR87_RS18045 0.36 -0.7 406,092 + ABZR87_RS18045 0.64 -1.1 406,092 + ABZR87_RS18045 0.64 -0.7 406,093 - ABZR87_RS18045 0.64 +0.2 406,419 + -1.0 406,551 + -2.0 406,551 + +0.6 406,551 + +1.1 406,556 + +0.2 406,556 + +0.1 406,557 - -1.3 406,557 - +1.8 406,564 + +0.6 406,564 + +0.6 406,777 - +1.3 406,777 - -0.3 406,918 - ABZR87_RS18050 0.27 +3.2 407,394 + +0.1 407,395 - +2.3 407,474 - -2.2
Or see this region's nucleotide sequence