Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17960 and ABZR87_RS17965 are separated by 78 nucleotides ABZR87_RS17965 and ABZR87_RS17970 are separated by 124 nucleotides ABZR87_RS17970 and ABZR87_RS17975 are separated by 225 nucleotides
ABZR87_RS17960: ABZR87_RS17960 - chemotaxis protein CheA, at 382,827 to 385,001
_RS17960
ABZR87_RS17965: ABZR87_RS17965 - chemotaxis protein CheW, at 385,080 to 385,571
_RS17965
ABZR87_RS17970: ABZR87_RS17970 - methyl-accepting chemotaxis protein, at 385,696 to 387,540
_RS17970
ABZR87_RS17975: ABZR87_RS17975 - methyl-accepting chemotaxis protein, at 387,766 to 389,688
_RS17975
Position (kb) 385
386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 384.801 kb on + strand at 384.801 kb on + strand at 384.802 kb on - strand at 384.802 kb on - strand at 384.802 kb on - strand at 384.872 kb on - strand at 384.999 kb on + strand at 385.128 kb on + strand at 385.128 kb on + strand at 385.128 kb on + strand at 385.129 kb on - strand at 385.129 kb on - strand at 385.159 kb on - strand, within ABZR87_RS17965 at 385.197 kb on + strand, within ABZR87_RS17965 at 385.197 kb on + strand, within ABZR87_RS17965 at 385.197 kb on + strand, within ABZR87_RS17965 at 385.327 kb on - strand, within ABZR87_RS17965 at 385.327 kb on - strand, within ABZR87_RS17965 at 385.327 kb on - strand, within ABZR87_RS17965 at 385.327 kb on - strand, within ABZR87_RS17965 at 385.327 kb on - strand, within ABZR87_RS17965 at 385.461 kb on + strand, within ABZR87_RS17965 at 385.617 kb on + strand at 385.617 kb on + strand at 385.617 kb on + strand at 385.617 kb on + strand at 385.617 kb on + strand at 385.618 kb on - strand at 385.618 kb on - strand at 385.618 kb on - strand at 385.661 kb on + strand at 385.662 kb on - strand at 385.662 kb on - strand at 385.662 kb on - strand at 385.662 kb on - strand at 385.807 kb on - strand at 385.825 kb on + strand at 385.826 kb on - strand at 385.826 kb on - strand at 386.228 kb on - strand, within ABZR87_RS17970 at 386.379 kb on + strand, within ABZR87_RS17970 at 386.380 kb on - strand, within ABZR87_RS17970 at 387.361 kb on - strand at 387.520 kb on - strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.546 kb on + strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.547 kb on - strand at 387.641 kb on - strand at 387.699 kb on + strand at 387.700 kb on - strand at 387.739 kb on + strand at 387.739 kb on + strand at 387.740 kb on - strand at 387.740 kb on - strand at 387.741 kb on + strand at 387.741 kb on + strand at 387.742 kb on - strand at 387.759 kb on - strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.862 kb on + strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.863 kb on - strand at 387.864 kb on + strand at 387.864 kb on + strand at 387.865 kb on - strand at 388.132 kb on + strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.133 kb on - strand, within ABZR87_RS17975 at 388.453 kb on + strand, within ABZR87_RS17975
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 384,801 + -0.2 384,801 + +1.0 384,802 - -0.6 384,802 - -1.5 384,802 - -1.2 384,872 - -1.1 384,999 + -1.2 385,128 + -1.3 385,128 + +0.6 385,128 + -2.0 385,129 - -0.4 385,129 - +0.0 385,159 - ABZR87_RS17965 0.16 -0.6 385,197 + ABZR87_RS17965 0.24 -0.1 385,197 + ABZR87_RS17965 0.24 -0.9 385,197 + ABZR87_RS17965 0.24 +1.6 385,327 - ABZR87_RS17965 0.50 -1.7 385,327 - ABZR87_RS17965 0.50 -2.0 385,327 - ABZR87_RS17965 0.50 -0.0 385,327 - ABZR87_RS17965 0.50 -0.1 385,327 - ABZR87_RS17965 0.50 -1.2 385,461 + ABZR87_RS17965 0.77 -0.6 385,617 + -1.4 385,617 + -1.7 385,617 + -0.7 385,617 + -0.4 385,617 + +0.8 385,618 - +1.2 385,618 - +0.2 385,618 - +0.2 385,661 + -0.3 385,662 - +0.6 385,662 - +1.6 385,662 - +1.4 385,662 - +0.0 385,807 - -0.8 385,825 + -0.1 385,826 - +1.2 385,826 - +2.2 386,228 - ABZR87_RS17970 0.29 +0.3 386,379 + ABZR87_RS17970 0.37 +0.6 386,380 - ABZR87_RS17970 0.37 +0.1 387,361 - +0.8 387,520 - +1.2 387,546 + -0.0 387,546 + +0.6 387,546 + -0.2 387,546 + +0.0 387,546 + -0.2 387,546 + +0.9 387,546 + +0.4 387,546 + -0.8 387,546 + +0.4 387,546 + +0.2 387,546 + -0.2 387,546 + -1.2 387,546 + -0.8 387,546 + +3.0 387,546 + +0.1 387,546 + +1.8 387,546 + +0.4 387,546 + -0.3 387,546 + -0.4 387,546 + -0.4 387,547 - +0.2 387,547 - -1.9 387,547 - -0.4 387,547 - -0.1 387,547 - -0.7 387,547 - -1.7 387,547 - -0.8 387,547 - +1.2 387,547 - -0.4 387,547 - +1.0 387,547 - -0.9 387,547 - +0.0 387,547 - -1.9 387,547 - -2.1 387,641 - -0.9 387,699 + +0.3 387,700 - -0.6 387,739 + +0.9 387,739 + -0.2 387,740 - -0.8 387,740 - -2.6 387,741 + +0.0 387,741 + -1.7 387,742 - -0.4 387,759 - -0.2 387,862 + +0.1 387,862 + -1.8 387,862 + -0.6 387,862 + +0.3 387,862 + +0.1 387,862 + +0.1 387,863 - +1.8 387,863 - +0.5 387,863 - +0.3 387,863 - +1.1 387,864 + -0.1 387,864 + -0.2 387,865 - +0.1 388,132 + ABZR87_RS17975 0.19 +0.0 388,133 - ABZR87_RS17975 0.19 +0.6 388,133 - ABZR87_RS17975 0.19 -1.9 388,133 - ABZR87_RS17975 0.19 -2.3 388,133 - ABZR87_RS17975 0.19 -1.0 388,453 + ABZR87_RS17975 0.36 +0.4
Or see this region's nucleotide sequence