Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17890

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotidesABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotides ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364 _RS17890 ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445 _RS17895 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 369.867 kb on + strand, within ABZR87_RS17885at 369.868 kb on - strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.569 kb on + strandat 370.569 kb on + strandat 370.570 kb on - strandat 370.570 kb on - strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.588 kb on - strandat 370.588 kb on - strandat 370.972 kb on + strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.307 kb on + strand, within ABZR87_RS17890at 371.386 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.402 kb on - strandat 371.402 kb on - strandat 371.530 kb on + strandat 371.530 kb on + strandat 371.531 kb on - strandat 371.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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369,867 + ABZR87_RS17885 0.49 +0.1
369,868 - ABZR87_RS17885 0.49 -1.7
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -0.2
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 +1.2
370,029 + ABZR87_RS17885 0.59 -0.6
370,029 + ABZR87_RS17885 0.59 -0.8
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 +1.4
370,029 + ABZR87_RS17885 0.59 -0.5
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -0.9
370,030 - ABZR87_RS17885 0.59 +1.8
370,030 - ABZR87_RS17885 0.59 -1.0
370,030 - ABZR87_RS17885 0.59 +0.6
370,030 - ABZR87_RS17885 0.59 -0.5
370,030 - ABZR87_RS17885 0.59 -1.0
370,030 - ABZR87_RS17885 0.59 -1.3
370,030 - ABZR87_RS17885 0.59 +0.3
370,030 - ABZR87_RS17885 0.59 -0.1
370,030 - ABZR87_RS17885 0.59 -1.2
370,222 + ABZR87_RS17885 0.71 +0.3
370,222 + ABZR87_RS17885 0.71 +4.2
370,223 - ABZR87_RS17885 0.71 -0.5
370,223 - ABZR87_RS17885 0.71 -1.6
370,452 + ABZR87_RS17885 0.85 -1.4
370,452 + ABZR87_RS17885 0.85 +0.6
370,453 - ABZR87_RS17885 0.85 -0.1
370,453 - ABZR87_RS17885 0.85 -0.2
370,453 - ABZR87_RS17885 0.85 -0.5
370,453 - ABZR87_RS17885 0.85 -0.0
370,495 + ABZR87_RS17885 0.88 -1.5
370,495 + ABZR87_RS17885 0.88 -1.3
370,495 + ABZR87_RS17885 0.88 +0.8
370,495 + ABZR87_RS17885 0.88 -0.5
370,496 - ABZR87_RS17885 0.88 -0.5
370,496 - ABZR87_RS17885 0.88 +1.7
370,496 - ABZR87_RS17885 0.88 +0.6
370,569 + +0.8
370,569 + -1.2
370,570 - -2.3
370,570 - +0.2
370,587 + +1.3
370,587 + -0.7
370,587 + +0.4
370,588 - +0.3
370,588 - +0.9
370,972 + ABZR87_RS17890 0.23 +0.3
370,973 - ABZR87_RS17890 0.24 -0.6
370,973 - ABZR87_RS17890 0.24 -1.2
371,028 + ABZR87_RS17890 0.34 -1.2
371,028 + ABZR87_RS17890 0.34 -1.2
371,029 - ABZR87_RS17890 0.35 +0.5
371,029 - ABZR87_RS17890 0.35 -1.5
371,029 - ABZR87_RS17890 0.35 -1.0
371,307 + ABZR87_RS17890 0.89 -1.7
371,386 + +0.3
371,401 + -1.8
371,401 + -1.5
371,401 + +0.6
371,402 - -0.3
371,402 - -0.6
371,530 + +0.3
371,530 + -1.5
371,531 - -0.2
371,540 - +0.5

Or see this region's nucleotide sequence