Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotides ABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotides
ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696
_RS17885
ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364
_RS17890
ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445
_RS17895
Position (kb)
370
371
372 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 369.867 kb on + strand, within ABZR87_RS17885 at 369.868 kb on - strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.029 kb on + strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.030 kb on - strand, within ABZR87_RS17885 at 370.222 kb on + strand, within ABZR87_RS17885 at 370.222 kb on + strand, within ABZR87_RS17885 at 370.223 kb on - strand, within ABZR87_RS17885 at 370.223 kb on - strand, within ABZR87_RS17885 at 370.452 kb on + strand, within ABZR87_RS17885 at 370.452 kb on + strand, within ABZR87_RS17885 at 370.453 kb on - strand, within ABZR87_RS17885 at 370.453 kb on - strand, within ABZR87_RS17885 at 370.453 kb on - strand, within ABZR87_RS17885 at 370.453 kb on - strand, within ABZR87_RS17885 at 370.495 kb on + strand, within ABZR87_RS17885 at 370.495 kb on + strand, within ABZR87_RS17885 at 370.495 kb on + strand, within ABZR87_RS17885 at 370.495 kb on + strand, within ABZR87_RS17885 at 370.496 kb on - strand, within ABZR87_RS17885 at 370.496 kb on - strand, within ABZR87_RS17885 at 370.496 kb on - strand, within ABZR87_RS17885 at 370.569 kb on + strand at 370.569 kb on + strand at 370.570 kb on - strand at 370.570 kb on - strand at 370.587 kb on + strand at 370.587 kb on + strand at 370.587 kb on + strand at 370.588 kb on - strand at 370.588 kb on - strand at 370.972 kb on + strand, within ABZR87_RS17890 at 370.973 kb on - strand, within ABZR87_RS17890 at 370.973 kb on - strand, within ABZR87_RS17890 at 371.028 kb on + strand, within ABZR87_RS17890 at 371.028 kb on + strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.307 kb on + strand, within ABZR87_RS17890 at 371.386 kb on + strand at 371.401 kb on + strand at 371.401 kb on + strand at 371.401 kb on + strand at 371.402 kb on - strand at 371.402 kb on - strand at 371.530 kb on + strand at 371.530 kb on + strand at 371.531 kb on - strand at 371.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 369,867 + ABZR87_RS17885 0.49 +0.1 369,868 - ABZR87_RS17885 0.49 -1.7 370,029 + ABZR87_RS17885 0.59 +0.1 370,029 + ABZR87_RS17885 0.59 -0.2 370,029 + ABZR87_RS17885 0.59 +0.4 370,029 + ABZR87_RS17885 0.59 +1.2 370,029 + ABZR87_RS17885 0.59 -0.6 370,029 + ABZR87_RS17885 0.59 -0.8 370,029 + ABZR87_RS17885 0.59 +0.4 370,029 + ABZR87_RS17885 0.59 +1.4 370,029 + ABZR87_RS17885 0.59 -0.5 370,029 + ABZR87_RS17885 0.59 +0.1 370,029 + ABZR87_RS17885 0.59 -0.9 370,030 - ABZR87_RS17885 0.59 +1.8 370,030 - ABZR87_RS17885 0.59 -1.0 370,030 - ABZR87_RS17885 0.59 +0.6 370,030 - ABZR87_RS17885 0.59 -0.5 370,030 - ABZR87_RS17885 0.59 -1.0 370,030 - ABZR87_RS17885 0.59 -1.3 370,030 - ABZR87_RS17885 0.59 +0.3 370,030 - ABZR87_RS17885 0.59 -0.1 370,030 - ABZR87_RS17885 0.59 -1.2 370,222 + ABZR87_RS17885 0.71 +0.3 370,222 + ABZR87_RS17885 0.71 +4.2 370,223 - ABZR87_RS17885 0.71 -0.5 370,223 - ABZR87_RS17885 0.71 -1.6 370,452 + ABZR87_RS17885 0.85 -1.4 370,452 + ABZR87_RS17885 0.85 +0.6 370,453 - ABZR87_RS17885 0.85 -0.1 370,453 - ABZR87_RS17885 0.85 -0.2 370,453 - ABZR87_RS17885 0.85 -0.5 370,453 - ABZR87_RS17885 0.85 -0.0 370,495 + ABZR87_RS17885 0.88 -1.5 370,495 + ABZR87_RS17885 0.88 -1.3 370,495 + ABZR87_RS17885 0.88 +0.8 370,495 + ABZR87_RS17885 0.88 -0.5 370,496 - ABZR87_RS17885 0.88 -0.5 370,496 - ABZR87_RS17885 0.88 +1.7 370,496 - ABZR87_RS17885 0.88 +0.6 370,569 + +0.8 370,569 + -1.2 370,570 - -2.3 370,570 - +0.2 370,587 + +1.3 370,587 + -0.7 370,587 + +0.4 370,588 - +0.3 370,588 - +0.9 370,972 + ABZR87_RS17890 0.23 +0.3 370,973 - ABZR87_RS17890 0.24 -0.6 370,973 - ABZR87_RS17890 0.24 -1.2 371,028 + ABZR87_RS17890 0.34 -1.2 371,028 + ABZR87_RS17890 0.34 -1.2 371,029 - ABZR87_RS17890 0.35 +0.5 371,029 - ABZR87_RS17890 0.35 -1.5 371,029 - ABZR87_RS17890 0.35 -1.0 371,307 + ABZR87_RS17890 0.89 -1.7 371,386 + +0.3 371,401 + -1.8 371,401 + -1.5 371,401 + +0.6 371,402 - -0.3 371,402 - -0.6 371,530 + +0.3 371,530 + -1.5 371,531 - -0.2 371,540 - +0.5
Or see this region's nucleotide sequence