Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17880

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17875 and ABZR87_RS17880 are separated by 304 nucleotidesABZR87_RS17880 and ABZR87_RS17885 are separated by 9 nucleotides ABZR87_RS17875: ABZR87_RS17875 - hypothetical protein, at 367,375 to 368,058 _RS17875 ABZR87_RS17880: ABZR87_RS17880 - GNAT family protein, at 368,363 to 369,070 _RS17880 ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 Position (kb) 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 367.376 kb on + strandat 367.465 kb on + strand, within ABZR87_RS17875at 367.465 kb on + strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.479 kb on - strand, within ABZR87_RS17875at 367.506 kb on - strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.706 kb on + strand, within ABZR87_RS17875at 367.707 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.761 kb on + strand, within ABZR87_RS17875at 367.762 kb on - strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 368.034 kb on - strandat 368.048 kb on + strandat 368.048 kb on + strandat 368.048 kb on + strandat 368.049 kb on - strandat 368.109 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.129 kb on + strandat 368.130 kb on - strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.142 kb on - strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.227 kb on + strandat 368.260 kb on - strandat 368.382 kb on - strandat 368.459 kb on + strand, within ABZR87_RS17880at 368.460 kb on - strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.822 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.919 kb on - strand, within ABZR87_RS17880at 369.081 kb on + strandat 369.082 kb on - strandat 369.100 kb on + strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.108 kb on + strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.427 kb on - strand, within ABZR87_RS17885at 369.538 kb on - strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.646 kb on - strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.867 kb on + strand, within ABZR87_RS17885at 369.868 kb on - strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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367,376 + +0.7
367,465 + ABZR87_RS17875 0.13 +0.7
367,465 + ABZR87_RS17875 0.13 -1.8
367,466 - ABZR87_RS17875 0.13 -0.8
367,466 - ABZR87_RS17875 0.13 -1.3
367,466 - ABZR87_RS17875 0.13 +0.3
367,478 + ABZR87_RS17875 0.15 -1.6
367,478 + ABZR87_RS17875 0.15 -1.1
367,478 + ABZR87_RS17875 0.15 +2.2
367,478 + ABZR87_RS17875 0.15 -2.9
367,478 + ABZR87_RS17875 0.15 -1.5
367,479 - ABZR87_RS17875 0.15 +0.8
367,506 - ABZR87_RS17875 0.19 -0.4
367,559 + ABZR87_RS17875 0.27 +0.4
367,559 + ABZR87_RS17875 0.27 -1.1
367,560 - ABZR87_RS17875 0.27 -0.6
367,560 - ABZR87_RS17875 0.27 -1.1
367,706 + ABZR87_RS17875 0.48 +0.6
367,707 - ABZR87_RS17875 0.49 -1.0
367,742 - ABZR87_RS17875 0.54 +0.5
367,742 - ABZR87_RS17875 0.54 +0.8
367,761 + ABZR87_RS17875 0.56 +0.1
367,762 - ABZR87_RS17875 0.57 -1.9
367,928 + ABZR87_RS17875 0.81 +1.4
367,928 + ABZR87_RS17875 0.81 +0.8
367,928 + ABZR87_RS17875 0.81 +0.2
368,034 - -2.2
368,048 + -2.0
368,048 + -0.1
368,048 + +0.2
368,049 - +0.2
368,109 + +0.4
368,113 + -0.3
368,113 + -1.0
368,113 + -2.1
368,113 + +1.8
368,113 + -0.2
368,113 + +0.5
368,114 - +0.1
368,114 - -1.8
368,114 - -1.6
368,114 - -1.2
368,114 - -0.4
368,114 - +0.7
368,114 - +1.0
368,129 + +1.1
368,130 - -1.6
368,141 + +0.1
368,141 + +0.6
368,141 + +0.1
368,142 - -0.7
368,174 + -2.4
368,174 + -0.0
368,174 + +1.3
368,175 - +0.5
368,175 - +0.5
368,175 - +1.4
368,175 - +1.6
368,175 - +1.4
368,227 + -0.5
368,260 - -0.6
368,382 - -0.5
368,459 + ABZR87_RS17880 0.14 +0.3
368,460 - ABZR87_RS17880 0.14 -0.9
368,549 + ABZR87_RS17880 0.26 +0.3
368,549 + ABZR87_RS17880 0.26 +0.3
368,549 + ABZR87_RS17880 0.26 +0.8
368,549 + ABZR87_RS17880 0.26 -0.4
368,549 + ABZR87_RS17880 0.26 +1.6
368,549 + ABZR87_RS17880 0.26 -1.5
368,549 + ABZR87_RS17880 0.26 -0.3
368,549 + ABZR87_RS17880 0.26 +0.4
368,549 + ABZR87_RS17880 0.26 -0.2
368,549 + ABZR87_RS17880 0.26 +0.1
368,550 - ABZR87_RS17880 0.26 +1.5
368,550 - ABZR87_RS17880 0.26 -0.2
368,550 - ABZR87_RS17880 0.26 +1.8
368,550 - ABZR87_RS17880 0.26 +0.2
368,550 - ABZR87_RS17880 0.26 +0.3
368,550 - ABZR87_RS17880 0.26 +0.6
368,550 - ABZR87_RS17880 0.26 -1.7
368,550 - ABZR87_RS17880 0.26 -0.0
368,594 + ABZR87_RS17880 0.33 -1.9
368,594 + ABZR87_RS17880 0.33 -0.6
368,594 + ABZR87_RS17880 0.33 -1.0
368,594 + ABZR87_RS17880 0.33 -0.4
368,595 - ABZR87_RS17880 0.33 +0.8
368,595 - ABZR87_RS17880 0.33 -0.5
368,595 - ABZR87_RS17880 0.33 -1.0
368,595 - ABZR87_RS17880 0.33 -1.2
368,595 - ABZR87_RS17880 0.33 +0.1
368,633 + ABZR87_RS17880 0.38 -1.0
368,633 + ABZR87_RS17880 0.38 +0.7
368,634 - ABZR87_RS17880 0.38 +1.6
368,634 - ABZR87_RS17880 0.38 -0.2
368,634 - ABZR87_RS17880 0.38 +0.8
368,634 - ABZR87_RS17880 0.38 +0.3
368,822 + ABZR87_RS17880 0.65 +0.2
368,918 + ABZR87_RS17880 0.78 -0.2
368,918 + ABZR87_RS17880 0.78 -1.7
368,919 - ABZR87_RS17880 0.79 +0.4
369,081 + +0.5
369,082 - +1.5
369,100 + +0.4
369,101 - +0.2
369,101 - -1.8
369,101 - -0.6
369,108 + -0.6
369,109 - -0.8
369,109 - +2.6
369,109 - -3.3
369,426 + ABZR87_RS17885 0.21 +0.9
369,426 + ABZR87_RS17885 0.21 -0.6
369,426 + ABZR87_RS17885 0.21 +0.8
369,427 - ABZR87_RS17885 0.21 -1.3
369,538 - ABZR87_RS17885 0.28 +0.5
369,645 + ABZR87_RS17885 0.35 -1.1
369,645 + ABZR87_RS17885 0.35 -0.7
369,646 - ABZR87_RS17885 0.35 -1.1
369,666 + ABZR87_RS17885 0.36 -0.1
369,666 + ABZR87_RS17885 0.36 +1.0
369,666 + ABZR87_RS17885 0.36 +0.4
369,666 + ABZR87_RS17885 0.36 -0.6
369,666 + ABZR87_RS17885 0.36 -0.9
369,666 + ABZR87_RS17885 0.36 +0.7
369,666 + ABZR87_RS17885 0.36 +1.0
369,666 + ABZR87_RS17885 0.36 -0.5
369,667 - ABZR87_RS17885 0.36 +1.6
369,667 - ABZR87_RS17885 0.36 +1.0
369,667 - ABZR87_RS17885 0.36 +3.4
369,667 - ABZR87_RS17885 0.36 -0.8
369,667 - ABZR87_RS17885 0.36 -0.5
369,668 + ABZR87_RS17885 0.36 -0.9
369,668 + ABZR87_RS17885 0.36 +2.6
369,668 + ABZR87_RS17885 0.36 -0.3
369,669 - ABZR87_RS17885 0.36 -0.4
369,669 - ABZR87_RS17885 0.36 +0.9
369,669 - ABZR87_RS17885 0.36 -0.7
369,735 + ABZR87_RS17885 0.41 -0.1
369,735 + ABZR87_RS17885 0.41 +1.1
369,735 + ABZR87_RS17885 0.41 -1.1
369,736 - ABZR87_RS17885 0.41 -1.1
369,736 - ABZR87_RS17885 0.41 -1.1
369,736 - ABZR87_RS17885 0.41 -0.0
369,736 - ABZR87_RS17885 0.41 +1.6
369,867 + ABZR87_RS17885 0.49 +0.1
369,868 - ABZR87_RS17885 0.49 -1.7
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -0.2
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 +1.2
370,029 + ABZR87_RS17885 0.59 -0.6
370,029 + ABZR87_RS17885 0.59 -0.8
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 +1.4
370,029 + ABZR87_RS17885 0.59 -0.5
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -0.9
370,030 - ABZR87_RS17885 0.59 +1.8
370,030 - ABZR87_RS17885 0.59 -1.0
370,030 - ABZR87_RS17885 0.59 +0.6
370,030 - ABZR87_RS17885 0.59 -0.5
370,030 - ABZR87_RS17885 0.59 -1.0
370,030 - ABZR87_RS17885 0.59 -1.3
370,030 - ABZR87_RS17885 0.59 +0.3
370,030 - ABZR87_RS17885 0.59 -0.1
370,030 - ABZR87_RS17885 0.59 -1.2

Or see this region's nucleotide sequence