Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17830

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17825 and ABZR87_RS17830 overlap by 4 nucleotidesABZR87_RS17830 and ABZR87_RS17835 overlap by 23 nucleotidesABZR87_RS17835 and ABZR87_RS17840 overlap by 4 nucleotides ABZR87_RS17825: ABZR87_RS17825 - F390 synthetase-related protein, at 357,830 to 359,140 _RS17825 ABZR87_RS17830: ABZR87_RS17830 - MBL fold metallo-hydrolase, at 359,137 to 359,943 _RS17830 ABZR87_RS17835: ABZR87_RS17835 - NAD(P)-dependent oxidoreductase, at 359,921 to 360,934 _RS17835 ABZR87_RS17840: ABZR87_RS17840 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 360,931 to 361,929 _RS17840 Position (kb) 359 360Strain fitness (log2 ratio) -2 -1 0 1 2 3at 358.150 kb on + strand, within ABZR87_RS17825at 358.410 kb on + strand, within ABZR87_RS17825at 358.410 kb on + strand, within ABZR87_RS17825at 358.446 kb on - strand, within ABZR87_RS17825at 358.487 kb on + strand, within ABZR87_RS17825at 358.488 kb on - strand, within ABZR87_RS17825at 358.668 kb on + strand, within ABZR87_RS17825at 358.669 kb on - strand, within ABZR87_RS17825at 358.669 kb on - strand, within ABZR87_RS17825at 358.833 kb on + strand, within ABZR87_RS17825at 358.834 kb on - strand, within ABZR87_RS17825at 359.005 kb on - strand, within ABZR87_RS17825at 359.110 kb on - strandat 359.219 kb on + strand, within ABZR87_RS17830at 359.219 kb on + strand, within ABZR87_RS17830at 359.219 kb on + strand, within ABZR87_RS17830at 359.220 kb on - strand, within ABZR87_RS17830at 359.279 kb on + strand, within ABZR87_RS17830at 359.280 kb on - strand, within ABZR87_RS17830at 359.727 kb on - strand, within ABZR87_RS17830at 359.748 kb on - strand, within ABZR87_RS17830at 359.901 kb on + strandat 359.901 kb on + strandat 359.902 kb on - strandat 360.004 kb on - strandat 360.049 kb on - strand, within ABZR87_RS17835at 360.168 kb on + strand, within ABZR87_RS17835at 360.246 kb on + strand, within ABZR87_RS17835at 360.312 kb on + strand, within ABZR87_RS17835at 360.312 kb on + strand, within ABZR87_RS17835at 360.312 kb on + strand, within ABZR87_RS17835at 360.313 kb on - strand, within ABZR87_RS17835at 360.313 kb on - strand, within ABZR87_RS17835at 360.516 kb on + strand, within ABZR87_RS17835at 360.516 kb on + strand, within ABZR87_RS17835at 360.517 kb on - strand, within ABZR87_RS17835at 360.543 kb on + strand, within ABZR87_RS17835at 360.543 kb on + strand, within ABZR87_RS17835at 360.573 kb on + strand, within ABZR87_RS17835at 360.573 kb on + strand, within ABZR87_RS17835at 360.574 kb on - strand, within ABZR87_RS17835at 360.582 kb on + strand, within ABZR87_RS17835at 360.582 kb on + strand, within ABZR87_RS17835at 360.582 kb on + strand, within ABZR87_RS17835at 360.583 kb on - strand, within ABZR87_RS17835at 360.601 kb on + strand, within ABZR87_RS17835at 360.601 kb on + strand, within ABZR87_RS17835at 360.602 kb on - strand, within ABZR87_RS17835at 360.676 kb on - strand, within ABZR87_RS17835at 360.687 kb on + strand, within ABZR87_RS17835at 360.687 kb on + strand, within ABZR87_RS17835at 360.687 kb on + strand, within ABZR87_RS17835at 360.687 kb on + strand, within ABZR87_RS17835at 360.688 kb on - strand, within ABZR87_RS17835at 360.791 kb on + strand, within ABZR87_RS17835at 360.792 kb on - strand, within ABZR87_RS17835at 360.792 kb on - strand, within ABZR87_RS17835at 360.795 kb on + strand, within ABZR87_RS17835at 360.796 kb on - strand, within ABZR87_RS17835at 360.796 kb on - strand, within ABZR87_RS17835at 360.796 kb on - strand, within ABZR87_RS17835at 360.796 kb on - strand, within ABZR87_RS17835at 360.934 kb on + strandat 360.934 kb on + strandat 360.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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358,150 + ABZR87_RS17825 0.24 -1.7
358,410 + ABZR87_RS17825 0.44 +0.3
358,410 + ABZR87_RS17825 0.44 -1.4
358,446 - ABZR87_RS17825 0.47 -0.7
358,487 + ABZR87_RS17825 0.50 +2.0
358,488 - ABZR87_RS17825 0.50 +0.4
358,668 + ABZR87_RS17825 0.64 +1.8
358,669 - ABZR87_RS17825 0.64 -1.4
358,669 - ABZR87_RS17825 0.64 -0.9
358,833 + ABZR87_RS17825 0.77 +0.9
358,834 - ABZR87_RS17825 0.77 +1.1
359,005 - ABZR87_RS17825 0.90 +0.1
359,110 - -1.4
359,219 + ABZR87_RS17830 0.10 -0.7
359,219 + ABZR87_RS17830 0.10 -1.5
359,219 + ABZR87_RS17830 0.10 -0.9
359,220 - ABZR87_RS17830 0.10 -1.1
359,279 + ABZR87_RS17830 0.18 +2.8
359,280 - ABZR87_RS17830 0.18 -0.7
359,727 - ABZR87_RS17830 0.73 -1.8
359,748 - ABZR87_RS17830 0.76 -1.6
359,901 + -0.7
359,901 + -0.3
359,902 - +0.6
360,004 - +0.4
360,049 - ABZR87_RS17835 0.13 +0.2
360,168 + ABZR87_RS17835 0.24 +0.4
360,246 + ABZR87_RS17835 0.32 -2.5
360,312 + ABZR87_RS17835 0.39 +1.0
360,312 + ABZR87_RS17835 0.39 -0.2
360,312 + ABZR87_RS17835 0.39 -0.1
360,313 - ABZR87_RS17835 0.39 +1.4
360,313 - ABZR87_RS17835 0.39 -1.1
360,516 + ABZR87_RS17835 0.59 -1.3
360,516 + ABZR87_RS17835 0.59 -0.2
360,517 - ABZR87_RS17835 0.59 +0.0
360,543 + ABZR87_RS17835 0.61 -0.7
360,543 + ABZR87_RS17835 0.61 +1.3
360,573 + ABZR87_RS17835 0.64 -0.1
360,573 + ABZR87_RS17835 0.64 -0.4
360,574 - ABZR87_RS17835 0.64 +0.4
360,582 + ABZR87_RS17835 0.65 -0.7
360,582 + ABZR87_RS17835 0.65 -0.7
360,582 + ABZR87_RS17835 0.65 +0.1
360,583 - ABZR87_RS17835 0.65 +0.7
360,601 + ABZR87_RS17835 0.67 -1.3
360,601 + ABZR87_RS17835 0.67 +1.1
360,602 - ABZR87_RS17835 0.67 +3.3
360,676 - ABZR87_RS17835 0.74 +1.3
360,687 + ABZR87_RS17835 0.76 -0.6
360,687 + ABZR87_RS17835 0.76 +0.4
360,687 + ABZR87_RS17835 0.76 +1.0
360,687 + ABZR87_RS17835 0.76 +0.8
360,688 - ABZR87_RS17835 0.76 +0.2
360,791 + ABZR87_RS17835 0.86 -0.3
360,792 - ABZR87_RS17835 0.86 +0.7
360,792 - ABZR87_RS17835 0.86 -0.9
360,795 + ABZR87_RS17835 0.86 +1.3
360,796 - ABZR87_RS17835 0.86 +0.3
360,796 - ABZR87_RS17835 0.86 +0.1
360,796 - ABZR87_RS17835 0.86 -0.2
360,796 - ABZR87_RS17835 0.86 +0.5
360,934 + +2.0
360,934 + -1.3
360,935 - +0.3

Or see this region's nucleotide sequence