Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17800 and ABZR87_RS17805 are separated by 103 nucleotides ABZR87_RS17805 and ABZR87_RS17810 are separated by 22 nucleotides ABZR87_RS17810 and ABZR87_RS17815 overlap by 17 nucleotides
ABZR87_RS17800: ABZR87_RS17800 - hypothetical protein, at 353,890 to 354,141
_RS17800
ABZR87_RS17805: ABZR87_RS17805 - alpha/beta hydrolase, at 354,245 to 354,982
_RS17805
ABZR87_RS17810: ABZR87_RS17810 - acyl-CoA desaturase, at 355,005 to 356,096
_RS17810
ABZR87_RS17815: ABZR87_RS17815 - sterol desaturase family protein, at 356,080 to 357,213
_RS17815
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.028 kb on + strand, within ABZR87_RS17800 at 354.029 kb on - strand, within ABZR87_RS17800 at 354.058 kb on + strand, within ABZR87_RS17800 at 354.058 kb on + strand, within ABZR87_RS17800 at 354.058 kb on + strand, within ABZR87_RS17800 at 354.058 kb on + strand, within ABZR87_RS17800 at 354.059 kb on - strand, within ABZR87_RS17800 at 354.059 kb on - strand, within ABZR87_RS17800 at 354.059 kb on - strand, within ABZR87_RS17800 at 354.088 kb on + strand, within ABZR87_RS17800 at 354.088 kb on + strand, within ABZR87_RS17800 at 354.088 kb on + strand, within ABZR87_RS17800 at 354.088 kb on + strand, within ABZR87_RS17800 at 354.089 kb on - strand, within ABZR87_RS17800 at 354.121 kb on + strand at 354.121 kb on + strand at 354.545 kb on + strand, within ABZR87_RS17805 at 354.545 kb on + strand, within ABZR87_RS17805 at 354.545 kb on + strand, within ABZR87_RS17805 at 354.603 kb on - strand, within ABZR87_RS17805 at 354.650 kb on + strand, within ABZR87_RS17805 at 355.067 kb on - strand at 355.067 kb on - strand at 355.081 kb on + strand at 355.113 kb on + strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.148 kb on + strand, within ABZR87_RS17810 at 355.148 kb on + strand, within ABZR87_RS17810 at 355.149 kb on - strand, within ABZR87_RS17810 at 355.149 kb on - strand, within ABZR87_RS17810 at 355.150 kb on + strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.202 kb on - strand, within ABZR87_RS17810 at 355.297 kb on + strand, within ABZR87_RS17810 at 355.297 kb on + strand, within ABZR87_RS17810 at 355.298 kb on - strand, within ABZR87_RS17810 at 355.298 kb on - strand, within ABZR87_RS17810 at 355.376 kb on - strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.684 kb on + strand, within ABZR87_RS17810 at 355.684 kb on + strand, within ABZR87_RS17810 at 355.685 kb on - strand, within ABZR87_RS17810 at 355.685 kb on - strand, within ABZR87_RS17810 at 355.714 kb on + strand, within ABZR87_RS17810 at 355.714 kb on + strand, within ABZR87_RS17810 at 355.715 kb on - strand, within ABZR87_RS17810 at 355.739 kb on - strand, within ABZR87_RS17810 at 355.879 kb on + strand, within ABZR87_RS17810 at 355.879 kb on + strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 356.345 kb on + strand, within ABZR87_RS17815 at 356.346 kb on - strand, within ABZR87_RS17815 at 356.379 kb on - strand, within ABZR87_RS17815 at 356.539 kb on + strand, within ABZR87_RS17815 at 356.539 kb on + strand, within ABZR87_RS17815 at 356.540 kb on - strand, within ABZR87_RS17815 at 356.579 kb on + strand, within ABZR87_RS17815 at 356.580 kb on - strand, within ABZR87_RS17815 at 356.636 kb on + strand, within ABZR87_RS17815 at 356.636 kb on + strand, within ABZR87_RS17815 at 356.637 kb on - strand, within ABZR87_RS17815 at 356.637 kb on - strand, within ABZR87_RS17815 at 356.732 kb on + strand, within ABZR87_RS17815 at 356.732 kb on + strand, within ABZR87_RS17815 at 356.747 kb on + strand, within ABZR87_RS17815 at 356.747 kb on + strand, within ABZR87_RS17815 at 356.768 kb on - strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.034 kb on + strand, within ABZR87_RS17815 at 357.034 kb on + strand, within ABZR87_RS17815 at 357.035 kb on - strand, within ABZR87_RS17815
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 354,028 + ABZR87_RS17800 0.55 +1.5 354,029 - ABZR87_RS17800 0.55 -0.4 354,058 + ABZR87_RS17800 0.67 +1.5 354,058 + ABZR87_RS17800 0.67 -0.1 354,058 + ABZR87_RS17800 0.67 -0.8 354,058 + ABZR87_RS17800 0.67 -0.7 354,059 - ABZR87_RS17800 0.67 +1.1 354,059 - ABZR87_RS17800 0.67 -1.0 354,059 - ABZR87_RS17800 0.67 -0.3 354,088 + ABZR87_RS17800 0.79 +0.8 354,088 + ABZR87_RS17800 0.79 -0.6 354,088 + ABZR87_RS17800 0.79 +0.2 354,088 + ABZR87_RS17800 0.79 -1.1 354,089 - ABZR87_RS17800 0.79 -0.1 354,121 + +0.7 354,121 + -0.5 354,545 + ABZR87_RS17805 0.41 -0.4 354,545 + ABZR87_RS17805 0.41 -0.8 354,545 + ABZR87_RS17805 0.41 -0.4 354,603 - ABZR87_RS17805 0.49 +0.0 354,650 + ABZR87_RS17805 0.55 -0.8 355,067 - -0.7 355,067 - +1.4 355,081 + +1.3 355,113 + -0.7 355,114 - +0.5 355,114 - -2.7 355,114 - -0.7 355,114 - -1.8 355,148 + ABZR87_RS17810 0.13 -0.7 355,148 + ABZR87_RS17810 0.13 -0.4 355,149 - ABZR87_RS17810 0.13 +0.6 355,149 - ABZR87_RS17810 0.13 -0.6 355,150 + ABZR87_RS17810 0.13 -1.9 355,151 - ABZR87_RS17810 0.13 +0.8 355,151 - ABZR87_RS17810 0.13 -1.0 355,151 - ABZR87_RS17810 0.13 -0.1 355,202 - ABZR87_RS17810 0.18 +1.3 355,297 + ABZR87_RS17810 0.27 +0.8 355,297 + ABZR87_RS17810 0.27 +0.2 355,298 - ABZR87_RS17810 0.27 +3.3 355,298 - ABZR87_RS17810 0.27 +0.6 355,376 - ABZR87_RS17810 0.34 +0.2 355,552 + ABZR87_RS17810 0.50 +0.9 355,552 + ABZR87_RS17810 0.50 +1.3 355,552 + ABZR87_RS17810 0.50 -1.1 355,553 - ABZR87_RS17810 0.50 -0.8 355,553 - ABZR87_RS17810 0.50 -0.9 355,553 - ABZR87_RS17810 0.50 -0.7 355,567 + ABZR87_RS17810 0.51 +1.3 355,567 + ABZR87_RS17810 0.51 -0.2 355,567 + ABZR87_RS17810 0.51 +1.4 355,567 + ABZR87_RS17810 0.51 +1.7 355,568 - ABZR87_RS17810 0.52 -0.5 355,568 - ABZR87_RS17810 0.52 -0.7 355,568 - ABZR87_RS17810 0.52 +0.3 355,568 - ABZR87_RS17810 0.52 +1.3 355,684 + ABZR87_RS17810 0.62 +1.2 355,684 + ABZR87_RS17810 0.62 +0.3 355,685 - ABZR87_RS17810 0.62 +0.2 355,685 - ABZR87_RS17810 0.62 +0.2 355,714 + ABZR87_RS17810 0.65 +0.6 355,714 + ABZR87_RS17810 0.65 -1.9 355,715 - ABZR87_RS17810 0.65 -2.6 355,739 - ABZR87_RS17810 0.67 +0.5 355,879 + ABZR87_RS17810 0.80 +1.1 355,879 + ABZR87_RS17810 0.80 -2.2 355,928 - ABZR87_RS17810 0.85 +0.3 355,928 - ABZR87_RS17810 0.85 +0.6 355,928 - ABZR87_RS17810 0.85 +0.9 356,345 + ABZR87_RS17815 0.23 +1.0 356,346 - ABZR87_RS17815 0.23 +1.5 356,379 - ABZR87_RS17815 0.26 -0.0 356,539 + ABZR87_RS17815 0.40 +1.1 356,539 + ABZR87_RS17815 0.40 +1.4 356,540 - ABZR87_RS17815 0.41 -0.8 356,579 + ABZR87_RS17815 0.44 +0.8 356,580 - ABZR87_RS17815 0.44 -0.1 356,636 + ABZR87_RS17815 0.49 -1.0 356,636 + ABZR87_RS17815 0.49 -0.5 356,637 - ABZR87_RS17815 0.49 -0.5 356,637 - ABZR87_RS17815 0.49 +1.1 356,732 + ABZR87_RS17815 0.57 -1.5 356,732 + ABZR87_RS17815 0.57 -1.0 356,747 + ABZR87_RS17815 0.59 -0.5 356,747 + ABZR87_RS17815 0.59 -0.8 356,768 - ABZR87_RS17815 0.61 +0.4 357,030 + ABZR87_RS17815 0.84 +1.0 357,030 + ABZR87_RS17815 0.84 +0.9 357,030 + ABZR87_RS17815 0.84 -0.9 357,030 + ABZR87_RS17815 0.84 +2.1 357,031 - ABZR87_RS17815 0.84 +1.6 357,031 - ABZR87_RS17815 0.84 +1.0 357,031 - ABZR87_RS17815 0.84 -0.1 357,031 - ABZR87_RS17815 0.84 -0.7 357,031 - ABZR87_RS17815 0.84 -0.4 357,031 - ABZR87_RS17815 0.84 +0.2 357,031 - ABZR87_RS17815 0.84 -0.2 357,032 + ABZR87_RS17815 0.84 +0.2 357,032 + ABZR87_RS17815 0.84 -1.1 357,032 + ABZR87_RS17815 0.84 -1.2 357,033 - ABZR87_RS17815 0.84 +0.5 357,033 - ABZR87_RS17815 0.84 +0.5 357,033 - ABZR87_RS17815 0.84 -1.5 357,034 + ABZR87_RS17815 0.84 -1.3 357,034 + ABZR87_RS17815 0.84 +0.7 357,035 - ABZR87_RS17815 0.84 +0.5
Or see this region's nucleotide sequence