Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17330 and ABZR87_RS17335 are separated by 32 nucleotides ABZR87_RS17335 and ABZR87_RS17340 are separated by 79 nucleotides ABZR87_RS17340 and ABZR87_RS17345 are separated by 106 nucleotides
ABZR87_RS17330: ABZR87_RS17330 - NAD(P)H-dependent oxidoreductase, at 243,780 to 244,406
_RS17330
ABZR87_RS17335: ABZR87_RS17335 - pyroglutamyl-peptidase I, at 244,439 to 245,086
_RS17335
ABZR87_RS17340: ABZR87_RS17340 - MarR family transcriptional regulator, at 245,166 to 245,585
_RS17340
ABZR87_RS17345: ABZR87_RS17345 - hypothetical protein, at 245,692 to 247,281
_RS17345
Position (kb)
245
246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 244.251 kb on + strand, within ABZR87_RS17330 at 244.252 kb on - strand, within ABZR87_RS17330 at 244.252 kb on - strand, within ABZR87_RS17330 at 244.260 kb on + strand, within ABZR87_RS17330 at 244.260 kb on + strand, within ABZR87_RS17330 at 244.261 kb on - strand, within ABZR87_RS17330 at 244.261 kb on - strand, within ABZR87_RS17330 at 244.492 kb on + strand at 244.492 kb on + strand at 244.493 kb on - strand at 244.493 kb on - strand at 244.645 kb on - strand, within ABZR87_RS17335 at 244.666 kb on - strand, within ABZR87_RS17335 at 244.666 kb on - strand, within ABZR87_RS17335 at 244.752 kb on + strand, within ABZR87_RS17335 at 244.752 kb on + strand, within ABZR87_RS17335 at 244.783 kb on + strand, within ABZR87_RS17335 at 244.858 kb on + strand, within ABZR87_RS17335 at 244.859 kb on - strand, within ABZR87_RS17335 at 244.859 kb on - strand, within ABZR87_RS17335 at 245.080 kb on + strand at 245.080 kb on + strand at 245.081 kb on - strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.168 kb on - strand at 245.211 kb on - strand, within ABZR87_RS17340 at 245.211 kb on - strand, within ABZR87_RS17340 at 245.513 kb on - strand, within ABZR87_RS17340 at 245.566 kb on + strand at 245.567 kb on - strand at 245.597 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.723 kb on + strand at 245.723 kb on + strand at 245.723 kb on + strand at 245.861 kb on + strand, within ABZR87_RS17345 at 246.283 kb on + strand, within ABZR87_RS17345 at 246.283 kb on + strand, within ABZR87_RS17345 at 246.284 kb on - strand, within ABZR87_RS17345 at 246.315 kb on - strand, within ABZR87_RS17345 at 246.381 kb on - strand, within ABZR87_RS17345 at 246.381 kb on - strand, within ABZR87_RS17345 at 246.461 kb on + strand, within ABZR87_RS17345 at 246.461 kb on + strand, within ABZR87_RS17345 at 246.461 kb on + strand, within ABZR87_RS17345 at 246.462 kb on - strand, within ABZR87_RS17345 at 246.462 kb on - strand, within ABZR87_RS17345 at 246.504 kb on - strand, within ABZR87_RS17345 at 246.504 kb on - strand, within ABZR87_RS17345
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 244,251 + ABZR87_RS17330 0.75 -0.1 244,252 - ABZR87_RS17330 0.75 +0.0 244,252 - ABZR87_RS17330 0.75 +0.8 244,260 + ABZR87_RS17330 0.77 -0.4 244,260 + ABZR87_RS17330 0.77 -1.8 244,261 - ABZR87_RS17330 0.77 +1.2 244,261 - ABZR87_RS17330 0.77 +1.1 244,492 + -1.2 244,492 + +1.0 244,493 - +1.1 244,493 - +0.3 244,645 - ABZR87_RS17335 0.32 -0.6 244,666 - ABZR87_RS17335 0.35 -0.2 244,666 - ABZR87_RS17335 0.35 -1.1 244,752 + ABZR87_RS17335 0.48 -0.3 244,752 + ABZR87_RS17335 0.48 +0.0 244,783 + ABZR87_RS17335 0.53 -0.8 244,858 + ABZR87_RS17335 0.65 +0.7 244,859 - ABZR87_RS17335 0.65 +0.9 244,859 - ABZR87_RS17335 0.65 +1.0 245,080 + -0.9 245,080 + -0.9 245,081 - +1.7 245,167 + -0.1 245,167 + -2.0 245,167 + +0.3 245,167 + +0.7 245,168 - +1.5 245,211 - ABZR87_RS17340 0.11 -0.2 245,211 - ABZR87_RS17340 0.11 -1.6 245,513 - ABZR87_RS17340 0.83 -0.7 245,566 + +0.4 245,567 - -1.3 245,597 + +0.5 245,693 + -0.4 245,693 + -1.9 245,693 + -2.9 245,693 + -1.8 245,693 + +1.0 245,693 + +2.0 245,693 + -1.6 245,723 + -1.0 245,723 + +0.1 245,723 + +0.2 245,861 + ABZR87_RS17345 0.11 +0.7 246,283 + ABZR87_RS17345 0.37 -2.1 246,283 + ABZR87_RS17345 0.37 +0.3 246,284 - ABZR87_RS17345 0.37 -1.0 246,315 - ABZR87_RS17345 0.39 -0.7 246,381 - ABZR87_RS17345 0.43 +0.7 246,381 - ABZR87_RS17345 0.43 +0.6 246,461 + ABZR87_RS17345 0.48 -1.3 246,461 + ABZR87_RS17345 0.48 -0.1 246,461 + ABZR87_RS17345 0.48 +0.2 246,462 - ABZR87_RS17345 0.48 +0.8 246,462 - ABZR87_RS17345 0.48 +0.4 246,504 - ABZR87_RS17345 0.51 +2.5 246,504 - ABZR87_RS17345 0.51 -0.3
Or see this region's nucleotide sequence