Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17340

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17330 and ABZR87_RS17335 are separated by 32 nucleotidesABZR87_RS17335 and ABZR87_RS17340 are separated by 79 nucleotidesABZR87_RS17340 and ABZR87_RS17345 are separated by 106 nucleotides ABZR87_RS17330: ABZR87_RS17330 - NAD(P)H-dependent oxidoreductase, at 243,780 to 244,406 _RS17330 ABZR87_RS17335: ABZR87_RS17335 - pyroglutamyl-peptidase I, at 244,439 to 245,086 _RS17335 ABZR87_RS17340: ABZR87_RS17340 - MarR family transcriptional regulator, at 245,166 to 245,585 _RS17340 ABZR87_RS17345: ABZR87_RS17345 - hypothetical protein, at 245,692 to 247,281 _RS17345 Position (kb) 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 244.251 kb on + strand, within ABZR87_RS17330at 244.252 kb on - strand, within ABZR87_RS17330at 244.252 kb on - strand, within ABZR87_RS17330at 244.260 kb on + strand, within ABZR87_RS17330at 244.260 kb on + strand, within ABZR87_RS17330at 244.261 kb on - strand, within ABZR87_RS17330at 244.261 kb on - strand, within ABZR87_RS17330at 244.492 kb on + strandat 244.492 kb on + strandat 244.493 kb on - strandat 244.493 kb on - strandat 244.645 kb on - strand, within ABZR87_RS17335at 244.666 kb on - strand, within ABZR87_RS17335at 244.666 kb on - strand, within ABZR87_RS17335at 244.752 kb on + strand, within ABZR87_RS17335at 244.752 kb on + strand, within ABZR87_RS17335at 244.783 kb on + strand, within ABZR87_RS17335at 244.858 kb on + strand, within ABZR87_RS17335at 244.859 kb on - strand, within ABZR87_RS17335at 244.859 kb on - strand, within ABZR87_RS17335at 245.080 kb on + strandat 245.080 kb on + strandat 245.081 kb on - strandat 245.167 kb on + strandat 245.167 kb on + strandat 245.167 kb on + strandat 245.167 kb on + strandat 245.168 kb on - strandat 245.211 kb on - strand, within ABZR87_RS17340at 245.211 kb on - strand, within ABZR87_RS17340at 245.513 kb on - strand, within ABZR87_RS17340at 245.566 kb on + strandat 245.567 kb on - strandat 245.597 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.693 kb on + strandat 245.723 kb on + strandat 245.723 kb on + strandat 245.723 kb on + strandat 245.861 kb on + strand, within ABZR87_RS17345at 246.283 kb on + strand, within ABZR87_RS17345at 246.283 kb on + strand, within ABZR87_RS17345at 246.284 kb on - strand, within ABZR87_RS17345at 246.315 kb on - strand, within ABZR87_RS17345at 246.381 kb on - strand, within ABZR87_RS17345at 246.381 kb on - strand, within ABZR87_RS17345at 246.461 kb on + strand, within ABZR87_RS17345at 246.461 kb on + strand, within ABZR87_RS17345at 246.461 kb on + strand, within ABZR87_RS17345at 246.462 kb on - strand, within ABZR87_RS17345at 246.462 kb on - strand, within ABZR87_RS17345at 246.504 kb on - strand, within ABZR87_RS17345at 246.504 kb on - strand, within ABZR87_RS17345

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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244,251 + ABZR87_RS17330 0.75 -0.1
244,252 - ABZR87_RS17330 0.75 +0.0
244,252 - ABZR87_RS17330 0.75 +0.8
244,260 + ABZR87_RS17330 0.77 -0.4
244,260 + ABZR87_RS17330 0.77 -1.8
244,261 - ABZR87_RS17330 0.77 +1.2
244,261 - ABZR87_RS17330 0.77 +1.1
244,492 + -1.2
244,492 + +1.0
244,493 - +1.1
244,493 - +0.3
244,645 - ABZR87_RS17335 0.32 -0.6
244,666 - ABZR87_RS17335 0.35 -0.2
244,666 - ABZR87_RS17335 0.35 -1.1
244,752 + ABZR87_RS17335 0.48 -0.3
244,752 + ABZR87_RS17335 0.48 +0.0
244,783 + ABZR87_RS17335 0.53 -0.8
244,858 + ABZR87_RS17335 0.65 +0.7
244,859 - ABZR87_RS17335 0.65 +0.9
244,859 - ABZR87_RS17335 0.65 +1.0
245,080 + -0.9
245,080 + -0.9
245,081 - +1.7
245,167 + -0.1
245,167 + -2.0
245,167 + +0.3
245,167 + +0.7
245,168 - +1.5
245,211 - ABZR87_RS17340 0.11 -0.2
245,211 - ABZR87_RS17340 0.11 -1.6
245,513 - ABZR87_RS17340 0.83 -0.7
245,566 + +0.4
245,567 - -1.3
245,597 + +0.5
245,693 + -0.4
245,693 + -1.9
245,693 + -2.9
245,693 + -1.8
245,693 + +1.0
245,693 + +2.0
245,693 + -1.6
245,723 + -1.0
245,723 + +0.1
245,723 + +0.2
245,861 + ABZR87_RS17345 0.11 +0.7
246,283 + ABZR87_RS17345 0.37 -2.1
246,283 + ABZR87_RS17345 0.37 +0.3
246,284 - ABZR87_RS17345 0.37 -1.0
246,315 - ABZR87_RS17345 0.39 -0.7
246,381 - ABZR87_RS17345 0.43 +0.7
246,381 - ABZR87_RS17345 0.43 +0.6
246,461 + ABZR87_RS17345 0.48 -1.3
246,461 + ABZR87_RS17345 0.48 -0.1
246,461 + ABZR87_RS17345 0.48 +0.2
246,462 - ABZR87_RS17345 0.48 +0.8
246,462 - ABZR87_RS17345 0.48 +0.4
246,504 - ABZR87_RS17345 0.51 +2.5
246,504 - ABZR87_RS17345 0.51 -0.3

Or see this region's nucleotide sequence