Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17320

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17310 and ABZR87_RS17315 are separated by 116 nucleotidesABZR87_RS17315 and ABZR87_RS17320 are separated by 76 nucleotidesABZR87_RS17320 and ABZR87_RS17325 overlap by 4 nucleotidesABZR87_RS17325 and ABZR87_RS17330 overlap by 4 nucleotides ABZR87_RS17310: ABZR87_RS17310 - PadR family transcriptional regulator, at 241,460 to 242,128 _RS17310 ABZR87_RS17315: ABZR87_RS17315 - MarR family transcriptional regulator, at 242,245 to 242,763 _RS17315 ABZR87_RS17320: ABZR87_RS17320 - carboxymuconolactone decarboxylase family protein, at 242,840 to 243,337 _RS17320 ABZR87_RS17325: ABZR87_RS17325 - GNAT family N-acetyltransferase, at 243,334 to 243,783 _RS17325 ABZR87_RS17330: ABZR87_RS17330 - NAD(P)H-dependent oxidoreductase, at 243,780 to 244,406 _RS17330 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 241.851 kb on + strand, within ABZR87_RS17310at 241.851 kb on + strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.893 kb on + strand, within ABZR87_RS17310at 241.894 kb on - strand, within ABZR87_RS17310at 242.158 kb on - strandat 242.158 kb on - strandat 242.159 kb on + strandat 242.165 kb on - strandat 242.284 kb on + strandat 242.284 kb on + strandat 242.285 kb on - strandat 242.285 kb on - strandat 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.300 kb on - strand, within ABZR87_RS17315at 242.452 kb on - strand, within ABZR87_RS17315at 242.452 kb on - strand, within ABZR87_RS17315at 242.654 kb on + strand, within ABZR87_RS17315at 242.663 kb on + strand, within ABZR87_RS17315at 242.663 kb on + strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.867 kb on + strandat 242.868 kb on - strandat 242.868 kb on - strandat 242.884 kb on + strandat 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.547 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.563 kb on - strand, within ABZR87_RS17325at 243.563 kb on - strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.713 kb on - strand, within ABZR87_RS17325at 244.058 kb on + strand, within ABZR87_RS17330at 244.058 kb on + strand, within ABZR87_RS17330at 244.058 kb on + strand, within ABZR87_RS17330at 244.059 kb on - strand, within ABZR87_RS17330at 244.059 kb on - strand, within ABZR87_RS17330at 244.074 kb on + strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.075 kb on - strand, within ABZR87_RS17330at 244.251 kb on + strand, within ABZR87_RS17330at 244.252 kb on - strand, within ABZR87_RS17330at 244.252 kb on - strand, within ABZR87_RS17330at 244.260 kb on + strand, within ABZR87_RS17330at 244.260 kb on + strand, within ABZR87_RS17330at 244.261 kb on - strand, within ABZR87_RS17330at 244.261 kb on - strand, within ABZR87_RS17330

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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241,851 + ABZR87_RS17310 0.58 -0.7
241,851 + ABZR87_RS17310 0.58 -0.1
241,852 - ABZR87_RS17310 0.59 -0.1
241,852 - ABZR87_RS17310 0.59 -0.5
241,852 - ABZR87_RS17310 0.59 -1.6
241,852 - ABZR87_RS17310 0.59 -2.3
241,893 + ABZR87_RS17310 0.65 +1.3
241,894 - ABZR87_RS17310 0.65 +0.6
242,158 - +0.4
242,158 - -0.4
242,159 + +0.2
242,165 - +0.8
242,284 + -1.0
242,284 + -1.3
242,285 - -0.3
242,285 - -0.6
242,299 + ABZR87_RS17315 0.10 -0.4
242,299 + ABZR87_RS17315 0.10 -0.6
242,299 + ABZR87_RS17315 0.10 +0.2
242,300 - ABZR87_RS17315 0.11 +2.9
242,452 - ABZR87_RS17315 0.40 -0.7
242,452 - ABZR87_RS17315 0.40 +0.4
242,654 + ABZR87_RS17315 0.79 -0.4
242,663 + ABZR87_RS17315 0.81 +3.6
242,663 + ABZR87_RS17315 0.81 +1.5
242,664 - ABZR87_RS17315 0.81 -1.6
242,664 - ABZR87_RS17315 0.81 -0.6
242,664 - ABZR87_RS17315 0.81 -1.4
242,664 - ABZR87_RS17315 0.81 +1.0
242,664 - ABZR87_RS17315 0.81 -1.9
242,867 + -0.6
242,868 - -0.0
242,868 - -0.0
242,884 + -2.3
243,191 + ABZR87_RS17320 0.70 +0.1
243,191 + ABZR87_RS17320 0.70 +0.0
243,191 + ABZR87_RS17320 0.70 +0.9
243,191 + ABZR87_RS17320 0.70 +0.1
243,191 + ABZR87_RS17320 0.70 +1.2
243,192 - ABZR87_RS17320 0.71 -0.1
243,192 - ABZR87_RS17320 0.71 +0.8
243,192 - ABZR87_RS17320 0.71 -1.3
243,547 + ABZR87_RS17325 0.47 +0.8
243,562 + ABZR87_RS17325 0.51 -2.0
243,562 + ABZR87_RS17325 0.51 -0.4
243,562 + ABZR87_RS17325 0.51 -0.3
243,563 - ABZR87_RS17325 0.51 +0.4
243,563 - ABZR87_RS17325 0.51 -1.8
243,712 + ABZR87_RS17325 0.84 +4.8
243,712 + ABZR87_RS17325 0.84 +0.3
243,712 + ABZR87_RS17325 0.84 +0.2
243,712 + ABZR87_RS17325 0.84 +0.5
243,713 - ABZR87_RS17325 0.84 +0.5
244,058 + ABZR87_RS17330 0.44 +0.6
244,058 + ABZR87_RS17330 0.44 +1.0
244,058 + ABZR87_RS17330 0.44 +0.3
244,059 - ABZR87_RS17330 0.44 -0.8
244,059 - ABZR87_RS17330 0.44 +0.4
244,074 + ABZR87_RS17330 0.47 -0.1
244,075 - ABZR87_RS17330 0.47 -0.5
244,075 - ABZR87_RS17330 0.47 +0.4
244,075 - ABZR87_RS17330 0.47 +1.0
244,075 - ABZR87_RS17330 0.47 +0.1
244,075 - ABZR87_RS17330 0.47 -0.1
244,075 - ABZR87_RS17330 0.47 +1.6
244,075 - ABZR87_RS17330 0.47 +0.3
244,251 + ABZR87_RS17330 0.75 -0.1
244,252 - ABZR87_RS17330 0.75 +0.0
244,252 - ABZR87_RS17330 0.75 +0.8
244,260 + ABZR87_RS17330 0.77 -0.4
244,260 + ABZR87_RS17330 0.77 -1.8
244,261 - ABZR87_RS17330 0.77 +1.2
244,261 - ABZR87_RS17330 0.77 +1.1

Or see this region's nucleotide sequence