Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17225

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17220 and ABZR87_RS17225 overlap by 4 nucleotidesABZR87_RS17225 and ABZR87_RS17230 are separated by 31 nucleotides ABZR87_RS17220: ABZR87_RS17220 - maltose alpha-D-glucosyltransferase, at 215,839 to 219,333 _RS17220 ABZR87_RS17225: ABZR87_RS17225 - maltotransferase domain-containing protein, at 219,330 to 222,929 _RS17225 ABZR87_RS17230: ABZR87_RS17230 - glycogen synthase GlgA, at 222,961 to 224,592 _RS17230 Position (kb) 219 220 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 218.336 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.483 kb on + strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.484 kb on - strand, within ABZR87_RS17220at 218.543 kb on + strand, within ABZR87_RS17220at 218.543 kb on + strand, within ABZR87_RS17220at 218.543 kb on + strand, within ABZR87_RS17220at 218.544 kb on - strand, within ABZR87_RS17220at 218.544 kb on - strand, within ABZR87_RS17220at 218.690 kb on + strand, within ABZR87_RS17220at 218.691 kb on - strand, within ABZR87_RS17220at 218.691 kb on - strand, within ABZR87_RS17220at 218.822 kb on + strand, within ABZR87_RS17220at 218.823 kb on - strand, within ABZR87_RS17220at 218.823 kb on - strand, within ABZR87_RS17220at 218.823 kb on - strand, within ABZR87_RS17220at 218.825 kb on + strand, within ABZR87_RS17220at 218.897 kb on + strand, within ABZR87_RS17220at 218.898 kb on - strand, within ABZR87_RS17220at 218.898 kb on - strand, within ABZR87_RS17220at 218.924 kb on + strand, within ABZR87_RS17220at 218.924 kb on + strand, within ABZR87_RS17220at 218.924 kb on + strand, within ABZR87_RS17220at 218.925 kb on - strand, within ABZR87_RS17220at 218.925 kb on - strand, within ABZR87_RS17220at 218.925 kb on - strand, within ABZR87_RS17220at 218.925 kb on - strand, within ABZR87_RS17220at 218.925 kb on - strand, within ABZR87_RS17220at 219.116 kb on + strandat 219.117 kb on - strandat 219.143 kb on + strandat 219.188 kb on + strandat 219.189 kb on - strandat 219.189 kb on - strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.270 kb on - strandat 219.288 kb on - strandat 219.833 kb on - strand, within ABZR87_RS17225at 219.833 kb on - strand, within ABZR87_RS17225at 219.883 kb on + strand, within ABZR87_RS17225at 219.883 kb on + strand, within ABZR87_RS17225at 219.883 kb on + strand, within ABZR87_RS17225at 219.883 kb on + strand, within ABZR87_RS17225at 220.009 kb on + strand, within ABZR87_RS17225at 220.010 kb on - strand, within ABZR87_RS17225at 220.046 kb on - strand, within ABZR87_RS17225at 220.084 kb on + strand, within ABZR87_RS17225at 220.084 kb on + strand, within ABZR87_RS17225at 220.084 kb on + strand, within ABZR87_RS17225at 220.085 kb on - strand, within ABZR87_RS17225at 220.085 kb on - strand, within ABZR87_RS17225at 220.090 kb on + strand, within ABZR87_RS17225at 220.091 kb on - strand, within ABZR87_RS17225at 220.091 kb on - strand, within ABZR87_RS17225at 220.123 kb on + strand, within ABZR87_RS17225at 220.123 kb on + strand, within ABZR87_RS17225at 220.124 kb on - strand, within ABZR87_RS17225at 220.124 kb on - strand, within ABZR87_RS17225at 220.124 kb on - strand, within ABZR87_RS17225at 220.124 kb on - strand, within ABZR87_RS17225at 220.124 kb on - strand, within ABZR87_RS17225at 220.166 kb on + strand, within ABZR87_RS17225at 220.327 kb on + strand, within ABZR87_RS17225at 220.327 kb on + strand, within ABZR87_RS17225at 220.328 kb on - strand, within ABZR87_RS17225at 220.328 kb on - strand, within ABZR87_RS17225at 220.355 kb on - strand, within ABZR87_RS17225at 220.355 kb on - strand, within ABZR87_RS17225at 220.355 kb on - strand, within ABZR87_RS17225at 220.355 kb on - strand, within ABZR87_RS17225at 220.378 kb on + strand, within ABZR87_RS17225at 220.379 kb on - strand, within ABZR87_RS17225at 220.529 kb on + strand, within ABZR87_RS17225at 220.672 kb on + strand, within ABZR87_RS17225at 220.672 kb on + strand, within ABZR87_RS17225at 220.673 kb on - strand, within ABZR87_RS17225at 220.673 kb on - strand, within ABZR87_RS17225at 220.673 kb on - strand, within ABZR87_RS17225at 220.843 kb on + strand, within ABZR87_RS17225at 220.843 kb on + strand, within ABZR87_RS17225at 220.843 kb on + strand, within ABZR87_RS17225at 220.843 kb on + strand, within ABZR87_RS17225at 220.844 kb on - strand, within ABZR87_RS17225at 220.844 kb on - strand, within ABZR87_RS17225at 220.844 kb on - strand, within ABZR87_RS17225at 221.080 kb on + strand, within ABZR87_RS17225at 221.081 kb on - strand, within ABZR87_RS17225at 221.116 kb on + strand, within ABZR87_RS17225at 221.116 kb on + strand, within ABZR87_RS17225at 221.116 kb on + strand, within ABZR87_RS17225at 221.116 kb on + strand, within ABZR87_RS17225at 221.117 kb on - strand, within ABZR87_RS17225at 221.117 kb on - strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.337 kb on + strand, within ABZR87_RS17225at 221.338 kb on - strand, within ABZR87_RS17225at 221.338 kb on - strand, within ABZR87_RS17225at 221.338 kb on - strand, within ABZR87_RS17225at 221.591 kb on + strand, within ABZR87_RS17225at 221.637 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.647 kb on + strand, within ABZR87_RS17225at 221.648 kb on - strand, within ABZR87_RS17225at 221.648 kb on - strand, within ABZR87_RS17225at 221.648 kb on - strand, within ABZR87_RS17225at 221.648 kb on - strand, within ABZR87_RS17225at 222.026 kb on - strand, within ABZR87_RS17225at 222.760 kb on + strandat 222.760 kb on + strandat 222.760 kb on + strandat 222.779 kb on - strandat 222.779 kb on - strandat 222.900 kb on - strandat 223.053 kb on + strandat 223.053 kb on + strandat 223.054 kb on - strandat 223.054 kb on - strandat 223.160 kb on + strand, within ABZR87_RS17230at 223.160 kb on + strand, within ABZR87_RS17230at 223.160 kb on + strand, within ABZR87_RS17230at 223.172 kb on + strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.220 kb on + strand, within ABZR87_RS17230at 223.220 kb on + strand, within ABZR87_RS17230at 223.221 kb on - strand, within ABZR87_RS17230at 223.425 kb on - strand, within ABZR87_RS17230at 223.425 kb on - strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.503 kb on - strand, within ABZR87_RS17230at 223.514 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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218,336 + ABZR87_RS17220 0.71 +0.4
218,483 + ABZR87_RS17220 0.76 -1.9
218,483 + ABZR87_RS17220 0.76 -1.2
218,483 + ABZR87_RS17220 0.76 +0.7
218,483 + ABZR87_RS17220 0.76 -0.2
218,483 + ABZR87_RS17220 0.76 -1.4
218,483 + ABZR87_RS17220 0.76 +1.9
218,483 + ABZR87_RS17220 0.76 -0.0
218,484 - ABZR87_RS17220 0.76 -1.0
218,484 - ABZR87_RS17220 0.76 +0.2
218,484 - ABZR87_RS17220 0.76 +0.7
218,484 - ABZR87_RS17220 0.76 -0.2
218,484 - ABZR87_RS17220 0.76 +2.8
218,484 - ABZR87_RS17220 0.76 -0.2
218,543 + ABZR87_RS17220 0.77 -0.4
218,543 + ABZR87_RS17220 0.77 -1.1
218,543 + ABZR87_RS17220 0.77 -0.0
218,544 - ABZR87_RS17220 0.77 -0.7
218,544 - ABZR87_RS17220 0.77 -0.5
218,690 + ABZR87_RS17220 0.82 -1.5
218,691 - ABZR87_RS17220 0.82 -0.5
218,691 - ABZR87_RS17220 0.82 -0.9
218,822 + ABZR87_RS17220 0.85 +0.6
218,823 - ABZR87_RS17220 0.85 -1.8
218,823 - ABZR87_RS17220 0.85 -1.3
218,823 - ABZR87_RS17220 0.85 +0.8
218,825 + ABZR87_RS17220 0.85 +0.4
218,897 + ABZR87_RS17220 0.87 -1.5
218,898 - ABZR87_RS17220 0.88 +0.1
218,898 - ABZR87_RS17220 0.88 -1.4
218,924 + ABZR87_RS17220 0.88 -0.3
218,924 + ABZR87_RS17220 0.88 +1.3
218,924 + ABZR87_RS17220 0.88 -0.1
218,925 - ABZR87_RS17220 0.88 +0.1
218,925 - ABZR87_RS17220 0.88 -0.1
218,925 - ABZR87_RS17220 0.88 +1.6
218,925 - ABZR87_RS17220 0.88 +1.3
218,925 - ABZR87_RS17220 0.88 +0.1
219,116 + +4.8
219,117 - +0.1
219,143 + +1.9
219,188 + -0.6
219,189 - -1.7
219,189 - +0.7
219,269 + +0.5
219,269 + -1.0
219,270 - +0.7
219,288 - -0.9
219,833 - ABZR87_RS17225 0.14 +0.2
219,833 - ABZR87_RS17225 0.14 +0.7
219,883 + ABZR87_RS17225 0.15 +1.4
219,883 + ABZR87_RS17225 0.15 -0.5
219,883 + ABZR87_RS17225 0.15 -0.0
219,883 + ABZR87_RS17225 0.15 -0.1
220,009 + ABZR87_RS17225 0.19 -0.0
220,010 - ABZR87_RS17225 0.19 -2.1
220,046 - ABZR87_RS17225 0.20 +0.8
220,084 + ABZR87_RS17225 0.21 -1.0
220,084 + ABZR87_RS17225 0.21 +0.8
220,084 + ABZR87_RS17225 0.21 -1.2
220,085 - ABZR87_RS17225 0.21 -1.6
220,085 - ABZR87_RS17225 0.21 -0.5
220,090 + ABZR87_RS17225 0.21 +0.5
220,091 - ABZR87_RS17225 0.21 +0.7
220,091 - ABZR87_RS17225 0.21 +0.3
220,123 + ABZR87_RS17225 0.22 +0.4
220,123 + ABZR87_RS17225 0.22 +4.5
220,124 - ABZR87_RS17225 0.22 -0.3
220,124 - ABZR87_RS17225 0.22 -0.1
220,124 - ABZR87_RS17225 0.22 -0.0
220,124 - ABZR87_RS17225 0.22 +2.4
220,124 - ABZR87_RS17225 0.22 +2.5
220,166 + ABZR87_RS17225 0.23 +1.3
220,327 + ABZR87_RS17225 0.28 -0.1
220,327 + ABZR87_RS17225 0.28 +0.7
220,328 - ABZR87_RS17225 0.28 +0.8
220,328 - ABZR87_RS17225 0.28 -0.6
220,355 - ABZR87_RS17225 0.28 -1.0
220,355 - ABZR87_RS17225 0.28 +2.0
220,355 - ABZR87_RS17225 0.28 +1.8
220,355 - ABZR87_RS17225 0.28 -1.5
220,378 + ABZR87_RS17225 0.29 +0.1
220,379 - ABZR87_RS17225 0.29 -0.2
220,529 + ABZR87_RS17225 0.33 -2.3
220,672 + ABZR87_RS17225 0.37 -0.3
220,672 + ABZR87_RS17225 0.37 -0.8
220,673 - ABZR87_RS17225 0.37 +1.0
220,673 - ABZR87_RS17225 0.37 -0.3
220,673 - ABZR87_RS17225 0.37 -0.8
220,843 + ABZR87_RS17225 0.42 +0.1
220,843 + ABZR87_RS17225 0.42 -1.2
220,843 + ABZR87_RS17225 0.42 -0.4
220,843 + ABZR87_RS17225 0.42 +3.6
220,844 - ABZR87_RS17225 0.42 +0.7
220,844 - ABZR87_RS17225 0.42 -0.2
220,844 - ABZR87_RS17225 0.42 -2.0
221,080 + ABZR87_RS17225 0.49 -0.1
221,081 - ABZR87_RS17225 0.49 +0.4
221,116 + ABZR87_RS17225 0.50 -0.4
221,116 + ABZR87_RS17225 0.50 +0.2
221,116 + ABZR87_RS17225 0.50 +0.9
221,116 + ABZR87_RS17225 0.50 -0.7
221,117 - ABZR87_RS17225 0.50 +0.0
221,117 - ABZR87_RS17225 0.50 +0.9
221,337 + ABZR87_RS17225 0.56 +0.8
221,337 + ABZR87_RS17225 0.56 +1.3
221,337 + ABZR87_RS17225 0.56 +0.4
221,337 + ABZR87_RS17225 0.56 -2.2
221,337 + ABZR87_RS17225 0.56 +1.0
221,337 + ABZR87_RS17225 0.56 -0.8
221,338 - ABZR87_RS17225 0.56 +0.6
221,338 - ABZR87_RS17225 0.56 +0.8
221,338 - ABZR87_RS17225 0.56 +1.7
221,591 + ABZR87_RS17225 0.63 +0.3
221,637 + ABZR87_RS17225 0.64 -2.0
221,647 + ABZR87_RS17225 0.64 -1.8
221,647 + ABZR87_RS17225 0.64 +1.0
221,647 + ABZR87_RS17225 0.64 -0.3
221,647 + ABZR87_RS17225 0.64 -0.8
221,647 + ABZR87_RS17225 0.64 +0.1
221,647 + ABZR87_RS17225 0.64 +0.3
221,647 + ABZR87_RS17225 0.64 +0.5
221,648 - ABZR87_RS17225 0.64 -1.4
221,648 - ABZR87_RS17225 0.64 +0.2
221,648 - ABZR87_RS17225 0.64 +0.9
221,648 - ABZR87_RS17225 0.64 -0.6
222,026 - ABZR87_RS17225 0.75 +0.6
222,760 + -1.7
222,760 + +0.3
222,760 + -0.2
222,779 - -1.2
222,779 - -0.8
222,900 - +0.4
223,053 + -0.7
223,053 + +0.8
223,054 - -2.2
223,054 - -0.0
223,160 + ABZR87_RS17230 0.12 -0.1
223,160 + ABZR87_RS17230 0.12 -1.0
223,160 + ABZR87_RS17230 0.12 +0.6
223,172 + ABZR87_RS17230 0.13 +0.3
223,173 - ABZR87_RS17230 0.13 -0.9
223,173 - ABZR87_RS17230 0.13 +0.1
223,173 - ABZR87_RS17230 0.13 +0.7
223,220 + ABZR87_RS17230 0.16 +0.5
223,220 + ABZR87_RS17230 0.16 -1.1
223,221 - ABZR87_RS17230 0.16 +0.7
223,425 - ABZR87_RS17230 0.28 -0.7
223,425 - ABZR87_RS17230 0.28 -2.0
223,502 + ABZR87_RS17230 0.33 +1.4
223,502 + ABZR87_RS17230 0.33 +0.7
223,502 + ABZR87_RS17230 0.33 +0.1
223,503 - ABZR87_RS17230 0.33 +0.6
223,514 + ABZR87_RS17230 0.34 -0.1
223,577 + ABZR87_RS17230 0.38 -1.9
223,577 + ABZR87_RS17230 0.38 -1.7
223,577 + ABZR87_RS17230 0.38 -0.8
223,577 + ABZR87_RS17230 0.38 -2.1
223,577 + ABZR87_RS17230 0.38 +2.6
223,578 - ABZR87_RS17230 0.38 -1.0
223,578 - ABZR87_RS17230 0.38 -0.7
223,578 - ABZR87_RS17230 0.38 +0.8

Or see this region's nucleotide sequence