Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16870

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
138,209	+		ABZR87_RS16865	0.52	-2.4
138,209	+		ABZR87_RS16865	0.52	+0.1
138,210	-		ABZR87_RS16865	0.53	-0.8
138,230	+		ABZR87_RS16865	0.54	-0.7
138,230	+		ABZR87_RS16865	0.54	+1.5
138,230	+		ABZR87_RS16865	0.54	+0.1
138,231	-		ABZR87_RS16865	0.54	+0.2
138,231	-		ABZR87_RS16865	0.54	+1.0
138,231	-		ABZR87_RS16865	0.54	-1.2
138,455	+		ABZR87_RS16865	0.70	-0.7
138,456	-		ABZR87_RS16865	0.70	-0.3
138,489	+		ABZR87_RS16865	0.73	-1.8
138,489	+		ABZR87_RS16865	0.73	-1.6
138,489	+		ABZR87_RS16865	0.73	-1.1
138,489	+		ABZR87_RS16865	0.73	-1.2
138,490	-		ABZR87_RS16865	0.73	-0.4
138,585	+		ABZR87_RS16865	0.80	-0.1
138,605	+		ABZR87_RS16865	0.81	+1.9
138,605	+		ABZR87_RS16865	0.81	+0.6
138,605	+		ABZR87_RS16865	0.81	-0.7
138,606	-		ABZR87_RS16865	0.81	+2.5
138,606	-		ABZR87_RS16865	0.81	+1.0
138,606	-		ABZR87_RS16865	0.81	+1.9
138,629	+		ABZR87_RS16865	0.83	-1.4
138,629	+		ABZR87_RS16865	0.83	-1.7
138,630	-		ABZR87_RS16865	0.83	-2.5
138,711	+		ABZR87_RS16865	0.89	-1.8
138,711	+		ABZR87_RS16865	0.89	+1.5
138,711	+		ABZR87_RS16865	0.89	+0.2
138,711	+		ABZR87_RS16865	0.89	-0.6
138,711	+		ABZR87_RS16865	0.89	-0.2
138,712	-		ABZR87_RS16865	0.89	+0.8
138,712	-		ABZR87_RS16865	0.89	-0.2
138,753	-				-1.4
138,841	+				+0.2
138,842	-				-0.5
138,855	+				+0.7
138,855	+				+1.8
138,855	+				+0.6
138,855	+				-0.9
138,897	+				-0.9
138,931	+				-0.4
138,932	-				+0.3
138,933	+				-0.9
138,933	+				-1.7
138,933	+				-0.1
138,933	+				-1.8
138,933	+				+0.1
138,933	+				+0.4
138,933	+				+1.0
138,933	+				-1.6
138,933	+				-0.6
138,934	-				-0.4
138,934	-				-2.6
138,934	-				-1.5
138,934	-				-0.9
138,934	-				+1.0
138,934	-				+3.3
138,934	-				+1.5
138,934	-				-0.5
138,934	-				-1.4
138,934	-				+1.1
138,934	-				-2.6
138,934	-				-2.3
138,934	-				+0.7
138,934	-				-0.9
138,934	-				-0.9
138,934	-				-1.1
138,934	-				-1.6
138,934	-				+0.0
138,937	+				+2.8
138,938	-				-0.3
138,938	-				-0.0
138,963	+				-2.8
138,963	+				+0.5
138,964	-				-1.5
138,999	+				-1.6
138,999	+				+0.0
138,999	+				-0.5
139,000	-				-1.3
139,002	+				-0.1
139,050	+				+0.7
139,068	-				-0.7
139,090	-				-1.5
139,092	+				+0.2
139,092	+				+0.3
139,275	+		ABZR87_RS16870	0.12	+1.1
139,275	+		ABZR87_RS16870	0.12	-0.4
139,275	+		ABZR87_RS16870	0.12	-1.7
139,348	+		ABZR87_RS16870	0.18	+0.1
139,448	+		ABZR87_RS16870	0.26	-1.4
139,448	+		ABZR87_RS16870	0.26	-1.7
139,448	+		ABZR87_RS16870	0.26	+0.1
139,448	+		ABZR87_RS16870	0.26	-0.8
139,448	+		ABZR87_RS16870	0.26	-0.3
139,448	+		ABZR87_RS16870	0.26	-1.3
139,448	+		ABZR87_RS16870	0.26	+0.2
139,448	+		ABZR87_RS16870	0.26	-0.9
139,448	+		ABZR87_RS16870	0.26	+0.2
139,449	-		ABZR87_RS16870	0.26	+0.1
139,449	-		ABZR87_RS16870	0.26	+0.7
139,449	-		ABZR87_RS16870	0.26	-1.3
139,449	-		ABZR87_RS16870	0.26	-0.7
139,449	-		ABZR87_RS16870	0.26	+3.4
139,641	-		ABZR87_RS16870	0.41	-0.4
139,641	-		ABZR87_RS16870	0.41	-1.9
139,641	-		ABZR87_RS16870	0.41	-1.8
139,641	-		ABZR87_RS16870	0.41	+0.3
139,684	+		ABZR87_RS16870	0.45	-1.1
139,761	+		ABZR87_RS16870	0.51	-0.3
139,761	+		ABZR87_RS16870	0.51	-1.3
139,761	+		ABZR87_RS16870	0.51	+0.6
139,761	+		ABZR87_RS16870	0.51	-1.1
139,761	+		ABZR87_RS16870	0.51	+0.1
139,762	-		ABZR87_RS16870	0.51	-1.7
139,762	-		ABZR87_RS16870	0.51	-1.3
139,863	+		ABZR87_RS16870	0.59	-1.2
139,863	+		ABZR87_RS16870	0.59	-2.5
139,863	+		ABZR87_RS16870	0.59	+1.7
139,863	+		ABZR87_RS16870	0.59	-0.9
139,864	-		ABZR87_RS16870	0.59	-0.2
139,864	-		ABZR87_RS16870	0.59	-2.0
139,864	-		ABZR87_RS16870	0.59	-0.7
139,864	-		ABZR87_RS16870	0.59	+0.3
139,864	-		ABZR87_RS16870	0.59	+0.5
139,864	-		ABZR87_RS16870	0.59	+0.4
139,864	-		ABZR87_RS16870	0.59	+0.2
139,958	+		ABZR87_RS16870	0.67	-0.9
139,983	+		ABZR87_RS16870	0.69	-0.7
139,983	+		ABZR87_RS16870	0.69	+2.0
140,126	+		ABZR87_RS16870	0.81	-0.7
140,126	+		ABZR87_RS16870	0.81	+0.8
140,126	+		ABZR87_RS16870	0.81	-0.5
140,126	+		ABZR87_RS16870	0.81	+1.3
140,126	+		ABZR87_RS16870	0.81	-0.6
140,127	-		ABZR87_RS16870	0.81	-0.0
140,161	+		ABZR87_RS16870	0.83	-0.9
140,161	+		ABZR87_RS16870	0.83	-2.3
140,161	+		ABZR87_RS16870	0.83	-0.7
140,162	-		ABZR87_RS16870	0.83	-0.3
140,162	-		ABZR87_RS16870	0.83	-0.6
140,167	-		ABZR87_RS16870	0.84	-0.1
140,263	+				-1.9
140,264	-				+0.2
140,264	-				-0.2
140,264	-				+0.1
140,264	-				-1.4
140,280	+				+1.0
140,281	-				-0.8
140,281	-				-1.9
140,281	-				+0.9
140,287	+				-1.2
140,287	+				-1.9
140,287	+				-0.7
140,287	+				-0.7
140,288	-				+0.7
140,288	-				-0.4
140,364	+				+0.7
140,365	-				-2.7
140,373	-				-0.5
140,373	-				+1.8
140,396	+				+1.8
140,396	+				-0.1
140,414	+				+2.0
140,481	+				-0.3
140,481	+				+2.3
140,502	+				-0.1
140,503	-				-0.4
140,503	-				-0.6
140,503	-				-1.0
140,527	-				-1.9
140,583	-				+2.3
140,593	+				-1.0
140,593	+				+2.8
140,593	+				+0.5
140,594	-				+1.7
140,594	-				+1.0
140,594	-				+0.4
140,594	-				+1.7
140,594	-				-0.4
140,600	+				+0.3
140,600	+				-2.2
140,600	+				-1.2
140,601	-				+1.3
140,642	+				+0.9
140,643	-				-1.7
140,687	+				+0.4
140,759	+				+1.9
140,759	+				+0.2
140,760	-				-1.1
140,760	-				-0.2
140,760	-				+0.9
140,839	+				+0.6
140,839	+				-2.4
140,839	+				+0.7
140,839	+				-0.5
140,840	-				-2.2
140,840	-				+0.0
140,881	+				+0.9
140,881	+				-0.3
140,881	+				-1.3
140,881	+				-0.4
140,882	-				-0.9
140,882	-				-0.4
140,882	-				-1.2
141,021	+		ABZR87_RS16875	0.37	-0.1
141,022	-		ABZR87_RS16875	0.38	+1.2
141,224	+		ABZR87_RS16875	0.86	-1.5
141,224	+		ABZR87_RS16875	0.86	-1.5
141,224	+		ABZR87_RS16875	0.86	-0.1
141,225	-		ABZR87_RS16875	0.86	+0.2
141,225	-		ABZR87_RS16875	0.86	+2.0
141,225	-		ABZR87_RS16875	0.86	-0.1
141,225	-		ABZR87_RS16875	0.86	-1.1
141,309	+				+0.1
141,309	+				-1.1
141,310	-				-0.1
141,310	-				+0.4
141,310	-				+0.3
141,310	-				-0.4
141,310	-				+0.7
141,310	-				-0.2
141,337	-				-0.2
141,337	-				-0.8