Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15880

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
3,355,770	+		ABZR87_RS15875	0.79	-0.6
3,355,770	+		ABZR87_RS15875	0.79	-1.0
3,355,770	+		ABZR87_RS15875	0.79	+0.4
3,355,770	+		ABZR87_RS15875	0.79	+0.2
3,355,770	+		ABZR87_RS15875	0.79	-0.6
3,355,771	-		ABZR87_RS15875	0.79	-0.1
3,355,771	-		ABZR87_RS15875	0.79	-0.6
3,355,771	-		ABZR87_RS15875	0.79	-0.2
3,355,771	-		ABZR87_RS15875	0.79	+0.6
3,355,771	-		ABZR87_RS15875	0.79	+0.5
3,355,793	-		ABZR87_RS15875	0.80	-1.3
3,355,954	+		ABZR87_RS15875	0.84	+0.9
3,355,954	+		ABZR87_RS15875	0.84	-0.2
3,355,954	+		ABZR87_RS15875	0.84	+0.0
3,355,954	+		ABZR87_RS15875	0.84	-0.3
3,355,955	-		ABZR87_RS15875	0.84	-0.2
3,356,023	+		ABZR87_RS15875	0.85	-2.3
3,356,107	+		ABZR87_RS15875	0.87	-1.0
3,356,107	+		ABZR87_RS15875	0.87	+0.6
3,356,107	+		ABZR87_RS15875	0.87	+2.4
3,356,107	+		ABZR87_RS15875	0.87	+0.8
3,356,107	+		ABZR87_RS15875	0.87	+1.0
3,356,108	-		ABZR87_RS15875	0.88	-0.0
3,356,108	-		ABZR87_RS15875	0.88	+0.7
3,356,188	-		ABZR87_RS15875	0.89	-1.5
3,356,266	+				+0.2
3,356,266	+				-0.5
3,356,267	-				+0.7
3,356,389	+				+0.8
3,356,389	+				+2.4
3,356,389	+				+0.7
3,356,455	+				+0.6
3,356,456	-				+0.7
3,356,622	+				-0.3
3,356,622	+				-1.9
3,356,622	+				+0.6
3,356,623	-				-0.8
3,356,623	-				-0.3
3,356,623	-				-1.0
3,356,623	-				+0.9
3,356,630	+				+0.3
3,356,630	+				+0.7
3,356,630	+				+0.7
3,356,630	+				-1.3
3,356,630	+				-1.7
3,356,631	-				-2.0
3,356,631	-				-0.4
3,356,631	-				+0.3
3,356,631	-				+0.5
3,356,631	-				+0.4
3,356,765	+				-0.5
3,356,765	+				-0.2
3,356,765	+				+0.3
3,356,766	-				+2.6
3,356,766	-				+0.2
3,356,766	-				-0.0
3,356,768	+				+0.4
3,356,769	-				-1.9
3,356,843	+				-0.7
3,356,844	-				+0.3
3,356,844	-				+1.5
3,356,844	-				+0.0
3,356,844	-				+0.8
3,356,912	+		ABZR87_RS15880	0.11	-0.6
3,356,912	+		ABZR87_RS15880	0.11	+0.2
3,356,912	+		ABZR87_RS15880	0.11	+0.0
3,356,912	+		ABZR87_RS15880	0.11	-1.4
3,356,913	-		ABZR87_RS15880	0.11	-0.3
3,356,913	-		ABZR87_RS15880	0.11	-1.1
3,356,913	-		ABZR87_RS15880	0.11	+2.1
3,356,913	-		ABZR87_RS15880	0.11	+0.1
3,356,913	-		ABZR87_RS15880	0.11	-1.9
3,356,913	-		ABZR87_RS15880	0.11	+0.4
3,356,913	-		ABZR87_RS15880	0.11	-0.2
3,357,083	+		ABZR87_RS15880	0.17	+1.3
3,357,083	+		ABZR87_RS15880	0.17	+1.3
3,357,083	+		ABZR87_RS15880	0.17	+1.2
3,357,083	+		ABZR87_RS15880	0.17	-0.7
3,357,083	+		ABZR87_RS15880	0.17	-1.5
3,357,095	+		ABZR87_RS15880	0.17	-0.4
3,357,096	-		ABZR87_RS15880	0.17	+0.1
3,357,096	-		ABZR87_RS15880	0.17	+1.2
3,357,096	-		ABZR87_RS15880	0.17	-2.5
3,357,125	+		ABZR87_RS15880	0.18	-0.2
3,357,126	-		ABZR87_RS15880	0.18	-0.2
3,357,126	-		ABZR87_RS15880	0.18	-0.4
3,357,126	-		ABZR87_RS15880	0.18	-0.4
3,357,131	+		ABZR87_RS15880	0.18	+0.8
3,357,169	-		ABZR87_RS15880	0.20	-0.2
3,357,176	+		ABZR87_RS15880	0.20	+0.2
3,357,176	+		ABZR87_RS15880	0.20	-0.6
3,357,176	+		ABZR87_RS15880	0.20	-0.1
3,357,177	-		ABZR87_RS15880	0.20	+0.2
3,357,185	+		ABZR87_RS15880	0.20	+0.8
3,357,185	+		ABZR87_RS15880	0.20	+0.7
3,357,185	+		ABZR87_RS15880	0.20	-1.0
3,357,186	-		ABZR87_RS15880	0.20	+1.4
3,357,186	-		ABZR87_RS15880	0.20	+0.1
3,357,186	-		ABZR87_RS15880	0.20	-0.2
3,357,188	+		ABZR87_RS15880	0.20	-0.4
3,357,188	+		ABZR87_RS15880	0.20	-0.4
3,357,188	+		ABZR87_RS15880	0.20	-0.3
3,357,188	+		ABZR87_RS15880	0.20	+0.5
3,357,188	+		ABZR87_RS15880	0.20	+0.5
3,357,189	-		ABZR87_RS15880	0.20	-0.6
3,357,189	-		ABZR87_RS15880	0.20	+0.0
3,357,189	-		ABZR87_RS15880	0.20	+2.1
3,357,189	-		ABZR87_RS15880	0.20	-1.3
3,357,189	-		ABZR87_RS15880	0.20	-1.1
3,357,260	+		ABZR87_RS15880	0.23	+0.9
3,357,260	+		ABZR87_RS15880	0.23	+0.0
3,357,261	-		ABZR87_RS15880	0.23	-1.4
3,357,261	-		ABZR87_RS15880	0.23	-0.7
3,357,263	+		ABZR87_RS15880	0.23	-1.3
3,357,263	+		ABZR87_RS15880	0.23	-2.0
3,357,263	+		ABZR87_RS15880	0.23	-1.8
3,357,285	+		ABZR87_RS15880	0.24	+0.5
3,357,285	+		ABZR87_RS15880	0.24	-0.0
3,357,285	+		ABZR87_RS15880	0.24	+0.0
3,357,285	+		ABZR87_RS15880	0.24	+1.8
3,357,285	+		ABZR87_RS15880	0.24	+1.0
3,357,285	+		ABZR87_RS15880	0.24	+1.5
3,357,286	-		ABZR87_RS15880	0.24	-0.4
3,357,286	-		ABZR87_RS15880	0.24	+0.3
3,357,288	-		ABZR87_RS15880	0.24	-0.0
3,357,288	-		ABZR87_RS15880	0.24	+0.8
3,357,323	+		ABZR87_RS15880	0.25	-1.4
3,357,323	+		ABZR87_RS15880	0.25	+0.9
3,357,598	-		ABZR87_RS15880	0.35	-0.2
3,357,674	+		ABZR87_RS15880	0.37	+0.4
3,357,674	+		ABZR87_RS15880	0.37	-1.1
3,357,675	-		ABZR87_RS15880	0.37	-0.7
3,357,675	-		ABZR87_RS15880	0.37	+1.5
3,357,675	-		ABZR87_RS15880	0.37	+1.1
3,357,675	-		ABZR87_RS15880	0.37	-1.6
3,357,675	-		ABZR87_RS15880	0.37	+0.5
3,357,678	+		ABZR87_RS15880	0.37	+1.3
3,357,678	+		ABZR87_RS15880	0.37	-0.6
3,357,678	+		ABZR87_RS15880	0.37	+0.4
3,357,678	+		ABZR87_RS15880	0.37	-1.5
3,357,678	+		ABZR87_RS15880	0.37	-1.7
3,357,678	+		ABZR87_RS15880	0.37	-0.7
3,357,678	+		ABZR87_RS15880	0.37	-0.5
3,357,679	-		ABZR87_RS15880	0.38	+1.2
3,357,679	-		ABZR87_RS15880	0.38	+0.1
3,357,679	-		ABZR87_RS15880	0.38	+0.0
3,357,679	-		ABZR87_RS15880	0.38	-0.5
3,357,698	+		ABZR87_RS15880	0.38	+0.6
3,357,698	+		ABZR87_RS15880	0.38	-0.5
3,357,698	+		ABZR87_RS15880	0.38	+0.2
3,357,699	-		ABZR87_RS15880	0.38	+0.7
3,357,699	-		ABZR87_RS15880	0.38	-0.4
3,357,699	-		ABZR87_RS15880	0.38	+0.2
3,357,699	-		ABZR87_RS15880	0.38	-0.1
3,357,812	+		ABZR87_RS15880	0.42	+0.3
3,357,812	+		ABZR87_RS15880	0.42	+0.1
3,357,812	+		ABZR87_RS15880	0.42	-1.4
3,357,813	-		ABZR87_RS15880	0.42	-0.8
3,357,813	-		ABZR87_RS15880	0.42	-1.5
3,357,813	-		ABZR87_RS15880	0.42	+0.0
3,357,853	+		ABZR87_RS15880	0.44	+0.4
3,358,049	+		ABZR87_RS15880	0.50	-0.5
3,358,050	-		ABZR87_RS15880	0.50	-0.0
3,358,058	+		ABZR87_RS15880	0.51	+0.6
3,358,243	-		ABZR87_RS15880	0.57	-2.2
3,358,268	+		ABZR87_RS15880	0.58	+1.1
3,358,268	+		ABZR87_RS15880	0.58	+0.0
3,358,268	+		ABZR87_RS15880	0.58	-0.9
3,358,268	+		ABZR87_RS15880	0.58	-0.6
3,358,268	+		ABZR87_RS15880	0.58	-1.4
3,358,268	+		ABZR87_RS15880	0.58	+0.3
3,358,268	+		ABZR87_RS15880	0.58	-0.8
3,358,268	+		ABZR87_RS15880	0.58	-0.2
3,358,268	+		ABZR87_RS15880	0.58	+1.0
3,358,268	+		ABZR87_RS15880	0.58	+1.1
3,358,269	-		ABZR87_RS15880	0.58	-1.1
3,358,269	-		ABZR87_RS15880	0.58	+0.4
3,358,269	-		ABZR87_RS15880	0.58	-0.8
3,358,269	-		ABZR87_RS15880	0.58	-1.5
3,358,269	-		ABZR87_RS15880	0.58	-0.1
3,358,269	-		ABZR87_RS15880	0.58	-0.1
3,358,269	-		ABZR87_RS15880	0.58	+1.0
3,358,269	-		ABZR87_RS15880	0.58	-0.0
3,358,269	-		ABZR87_RS15880	0.58	-2.1
3,358,269	-		ABZR87_RS15880	0.58	+2.4
3,358,269	-		ABZR87_RS15880	0.58	+1.4
3,358,404	+		ABZR87_RS15880	0.63	-0.6
3,358,404	+		ABZR87_RS15880	0.63	+0.3
3,358,404	+		ABZR87_RS15880	0.63	-0.1
3,358,404	+		ABZR87_RS15880	0.63	+0.7
3,358,404	+		ABZR87_RS15880	0.63	-1.6
3,358,405	-		ABZR87_RS15880	0.63	-0.2
3,358,414	+		ABZR87_RS15880	0.63	+0.5
3,358,415	-		ABZR87_RS15880	0.63	+0.5
3,358,431	-		ABZR87_RS15880	0.64	+0.6
3,358,479	-		ABZR87_RS15880	0.65	-2.8
3,358,490	+		ABZR87_RS15880	0.66	+0.4
3,358,490	+		ABZR87_RS15880	0.66	+0.6
3,358,639	+		ABZR87_RS15880	0.71	-0.6
3,358,639	+		ABZR87_RS15880	0.71	-0.0
3,358,639	+		ABZR87_RS15880	0.71	-1.1
3,358,640	-		ABZR87_RS15880	0.71	-0.1
3,358,640	-		ABZR87_RS15880	0.71	-1.0
3,358,644	-		ABZR87_RS15880	0.71	-1.2
3,358,644	-		ABZR87_RS15880	0.71	-1.1
3,358,644	-		ABZR87_RS15880	0.71	+1.4
3,358,644	-		ABZR87_RS15880	0.71	-1.6
3,358,715	+		ABZR87_RS15880	0.74	+0.9
3,358,716	-		ABZR87_RS15880	0.74	-2.6
3,358,716	-		ABZR87_RS15880	0.74	+3.1
3,358,742	+		ABZR87_RS15880	0.75	-0.1
3,358,743	-		ABZR87_RS15880	0.75	+0.5
3,358,743	-		ABZR87_RS15880	0.75	-0.2
3,358,808	+		ABZR87_RS15880	0.77	-1.4
3,358,808	+		ABZR87_RS15880	0.77	-0.4
3,358,808	+		ABZR87_RS15880	0.77	+0.8
3,358,809	-		ABZR87_RS15880	0.77	-0.2
3,358,809	-		ABZR87_RS15880	0.77	+0.8
3,358,809	-		ABZR87_RS15880	0.77	-1.2
3,358,809	-		ABZR87_RS15880	0.77	-1.1
3,358,809	-		ABZR87_RS15880	0.77	-0.6
3,358,838	+		ABZR87_RS15880	0.78	+0.3
3,358,862	+		ABZR87_RS15880	0.79	+1.2
3,358,863	-		ABZR87_RS15880	0.79	-0.4
3,358,863	-		ABZR87_RS15880	0.79	-1.8
3,359,012	+		ABZR87_RS15880	0.84	-0.5
3,359,013	-		ABZR87_RS15880	0.84	+0.0
3,359,013	-		ABZR87_RS15880	0.84	+0.6
3,359,084	+		ABZR87_RS15880	0.87	+0.6
3,359,084	+		ABZR87_RS15880	0.87	-0.6
3,359,084	+		ABZR87_RS15880	0.87	+0.6
3,359,084	+		ABZR87_RS15880	0.87	-0.4
3,359,084	+		ABZR87_RS15880	0.87	-1.4
3,359,084	+		ABZR87_RS15880	0.87	+2.4
3,359,085	-		ABZR87_RS15880	0.87	+0.8
3,359,085	-		ABZR87_RS15880	0.87	+0.0
3,359,085	-		ABZR87_RS15880	0.87	-0.4
3,359,085	-		ABZR87_RS15880	0.87	-0.9
3,359,085	-		ABZR87_RS15880	0.87	+0.5
3,359,085	-		ABZR87_RS15880	0.87	-1.3
3,359,330	+				-2.1
3,359,330	+				+0.3
3,359,330	+				+1.2
3,359,333	+				-0.5
3,359,333	+				-0.3
3,359,334	-				-0.9
3,359,334	-				-1.7
3,359,425	+				+0.5
3,359,425	+				+0.3
3,359,425	+				-1.5
3,359,425	+				+1.0
3,359,425	+				+0.5
3,359,425	+				+1.5
3,359,425	+				+0.5
3,359,425	+				-0.5
3,359,425	+				-0.5
3,359,425	+				+0.3
3,359,425	+				-0.6
3,359,425	+				-0.8
3,359,425	+				+0.4
3,359,425	+				+1.4
3,359,425	+				+0.3
3,359,425	+				+0.3
3,359,425	+				-0.4
3,359,425	+				+0.9
3,359,425	+				+0.2
3,359,425	+				-1.1
3,359,425	+				+0.8
3,359,425	+				-0.4
3,359,425	+				-0.7
3,359,426	-				-0.2
3,359,426	-				-0.2
3,359,426	-				-0.2
3,359,426	-				-0.4
3,359,426	-				+4.2
3,359,426	-				+0.3
3,359,426	-				+0.3
3,359,426	-				+0.3
3,359,426	-				-0.2
3,359,426	-				+2.2
3,359,426	-				+1.2
3,359,426	-				-0.2
3,359,426	-				+0.5
3,359,426	-				-0.6
3,359,426	-				+2.0
3,359,426	-				+0.7
3,359,426	-				-1.7
3,359,426	-				+0.8
3,359,426	-				-0.3
3,359,426	-				+0.8
3,359,426	-				+0.3
3,359,426	-				+1.2
3,359,443	+				-0.5
3,359,443	+				-1.6
3,359,444	-				-1.2
3,359,444	-				+0.2
3,359,444	-				-0.6
3,359,481	+				+1.0
3,359,481	+				-0.1
3,359,482	-				+1.1
3,359,482	-				-0.4
3,359,532	+				+0.6
3,359,532	+				+0.4
3,359,533	-				-0.8
3,359,533	-				+0.2
3,359,533	-				-1.3
3,359,543	+				+1.8
3,359,543	+				-1.6
3,359,543	+				-1.6
3,359,544	-				-0.6
3,359,559	+				+2.0
3,359,559	+				-0.4
3,359,559	+				+2.5
3,359,559	+				+2.1
3,359,559	+				-0.0
3,359,560	-				-0.2
3,359,560	-				+0.5
3,359,560	-				+1.1
3,359,598	+				+2.1
3,359,598	+				+0.1
3,359,598	+				+0.9
3,359,598	+				+0.4
3,359,599	-				+0.8
3,359,599	-				-0.9
3,359,677	+				+0.3
3,359,677	+				+0.3
3,359,689	+				+1.8
3,359,689	+				-1.0
3,359,689	+				-1.2
3,359,689	+				-1.5
3,359,689	+				+0.3
3,359,689	+				+0.2
3,359,689	+				+0.1
3,359,689	+				+0.4
3,359,689	+				-0.0
3,359,690	-				-0.1
3,359,690	-				+1.8
3,359,690	-				-0.5
3,359,690	-				-0.9
3,359,708	+				-0.2
3,359,708	+				-1.2
3,359,709	-				-0.2
3,359,709	-				+0.5
3,359,727	-				-0.0
3,359,772	+				+1.7
3,359,772	+				+2.6
3,359,772	+				-0.2
3,359,773	-				-0.1
3,359,773	-				+0.8
3,359,773	-				-0.6
3,359,773	-				+0.6
3,359,776	+				-1.3
3,359,776	+				-1.3
3,359,776	+				+2.3
3,359,776	+				-0.4
3,359,776	+				-0.8
3,359,776	+				-0.8
3,359,777	-				-0.5
3,359,777	-				+0.2
3,359,777	-				+0.5
3,359,777	-				-0.5
3,359,777	-				+2.3
3,359,777	-				+1.0
3,359,777	-				+2.2
3,359,777	-				-0.1
3,359,789	+				+1.0
3,359,789	+				+0.2
3,359,789	+				-0.6
3,359,790	-				-1.3
3,359,790	-				+0.8
3,360,096	+		ABZR87_RS15885	0.13	+0.9
3,360,097	-		ABZR87_RS15885	0.13	-2.4
3,360,304	+		ABZR87_RS15885	0.28	+0.2
3,360,304	+		ABZR87_RS15885	0.28	-0.2
3,360,305	-		ABZR87_RS15885	0.29	-0.3