Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11135

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
2,362,558	+		ABZR87_RS11130	0.31	+0.8
2,362,558	+		ABZR87_RS11130	0.31	+0.1
2,362,559	-		ABZR87_RS11130	0.32	+1.2
2,362,889	+		ABZR87_RS11130	0.71	-2.3
2,362,889	+		ABZR87_RS11130	0.71	-2.0
2,362,889	+		ABZR87_RS11130	0.71	+0.7
2,362,890	-		ABZR87_RS11130	0.71	-0.7
2,362,890	-		ABZR87_RS11130	0.71	+0.3
2,362,890	-		ABZR87_RS11130	0.71	-0.7
2,362,890	-		ABZR87_RS11130	0.71	-1.1
2,362,890	-		ABZR87_RS11130	0.71	-1.0
2,362,890	-		ABZR87_RS11130	0.71	+0.4
2,362,891	+		ABZR87_RS11130	0.71	-1.2
2,362,891	+		ABZR87_RS11130	0.71	+2.1
2,362,891	+		ABZR87_RS11130	0.71	+0.6
2,362,981	+		ABZR87_RS11130	0.82	-0.2
2,362,981	+		ABZR87_RS11130	0.82	-0.7
2,362,981	+		ABZR87_RS11130	0.82	-0.2
2,362,982	-		ABZR87_RS11130	0.82	-2.4
2,362,982	-		ABZR87_RS11130	0.82	+0.6
2,362,982	-		ABZR87_RS11130	0.82	-0.5
2,362,985	+		ABZR87_RS11130	0.82	+0.2
2,362,985	+		ABZR87_RS11130	0.82	+1.4
2,362,985	+		ABZR87_RS11130	0.82	-0.6
2,362,985	+		ABZR87_RS11130	0.82	-1.0
2,362,985	+		ABZR87_RS11130	0.82	+1.0
2,362,985	+		ABZR87_RS11130	0.82	+0.8
2,362,985	+		ABZR87_RS11130	0.82	-1.3
2,362,985	+		ABZR87_RS11130	0.82	+1.4
2,362,985	+		ABZR87_RS11130	0.82	-0.6
2,362,985	+		ABZR87_RS11130	0.82	+1.0
2,362,985	+		ABZR87_RS11130	0.82	-0.5
2,362,985	+		ABZR87_RS11130	0.82	-1.8
2,362,985	+		ABZR87_RS11130	0.82	-1.3
2,362,985	+		ABZR87_RS11130	0.82	-0.4
2,362,985	+		ABZR87_RS11130	0.82	-1.6
2,362,985	+		ABZR87_RS11130	0.82	-0.6
2,362,986	-		ABZR87_RS11130	0.82	-0.8
2,362,986	-		ABZR87_RS11130	0.82	-1.4
2,362,986	-		ABZR87_RS11130	0.82	-0.2
2,362,986	-		ABZR87_RS11130	0.82	-1.0
2,362,986	-		ABZR87_RS11130	0.82	+0.8
2,362,986	-		ABZR87_RS11130	0.82	+0.7
2,362,986	-		ABZR87_RS11130	0.82	+0.9
2,362,986	-		ABZR87_RS11130	0.82	-1.0
2,362,986	-		ABZR87_RS11130	0.82	-0.3
2,362,986	-		ABZR87_RS11130	0.82	+1.3
2,362,986	-		ABZR87_RS11130	0.82	+0.8
2,362,986	-		ABZR87_RS11130	0.82	+0.7
2,362,986	-		ABZR87_RS11130	0.82	-0.3
2,363,113	+				+1.0
2,363,113	+				-0.6
2,363,113	+				+0.5
2,363,113	+				+0.0
2,363,114	-				-0.3
2,363,172	+				-1.2
2,363,172	+				-0.3
2,363,175	-				+0.0
2,363,175	-				+2.2
2,363,175	-				-0.9
2,363,175	-				+0.5
2,363,248	-				-3.4
2,363,296	+				+0.8
2,363,297	-				-0.7
2,363,310	+				-1.0
2,363,310	+				-0.6
2,363,310	+				+0.4
2,363,384	-				-0.2
2,363,424	-				+0.3
2,363,424	-				+1.3
2,363,463	-				-1.2
2,363,555	+				-1.8
2,363,555	+				-0.5
2,363,555	+				-2.3
2,363,555	+				-1.6
2,363,630	+		ABZR87_RS11135	0.12	-0.3
2,363,631	-		ABZR87_RS11135	0.12	-1.8
2,363,661	+		ABZR87_RS11135	0.14	+0.3
2,363,661	+		ABZR87_RS11135	0.14	-0.2
2,363,662	-		ABZR87_RS11135	0.14	+0.2
2,363,789	+		ABZR87_RS11135	0.19	-1.0
2,363,789	+		ABZR87_RS11135	0.19	+2.1
2,363,789	+		ABZR87_RS11135	0.19	-2.3
2,363,790	-		ABZR87_RS11135	0.19	+1.4
2,363,790	-		ABZR87_RS11135	0.19	-0.3
2,363,794	+		ABZR87_RS11135	0.19	-0.7
2,363,847	+		ABZR87_RS11135	0.21	-0.7
2,363,847	+		ABZR87_RS11135	0.21	+1.2
2,363,873	+		ABZR87_RS11135	0.22	+0.2
2,363,987	+		ABZR87_RS11135	0.26	+0.6
2,363,987	+		ABZR87_RS11135	0.26	-0.3
2,363,987	+		ABZR87_RS11135	0.26	-0.8
2,363,987	+		ABZR87_RS11135	0.26	-1.3
2,363,987	+		ABZR87_RS11135	0.26	+0.8
2,363,987	+		ABZR87_RS11135	0.26	-2.4
2,363,987	+		ABZR87_RS11135	0.26	-0.2
2,363,987	+		ABZR87_RS11135	0.26	+0.2
2,363,988	-		ABZR87_RS11135	0.26	+0.0
2,363,988	-		ABZR87_RS11135	0.26	+0.0
2,363,988	-		ABZR87_RS11135	0.26	+0.4
2,363,988	-		ABZR87_RS11135	0.26	+0.7
2,363,988	-		ABZR87_RS11135	0.26	-1.8
2,363,988	-		ABZR87_RS11135	0.26	-2.0
2,363,988	-		ABZR87_RS11135	0.26	-0.5
2,363,988	-		ABZR87_RS11135	0.26	-2.2
2,364,002	+		ABZR87_RS11135	0.27	+3.1
2,364,003	-		ABZR87_RS11135	0.27	-1.6
2,364,107	-		ABZR87_RS11135	0.31	-0.0
2,364,126	+		ABZR87_RS11135	0.32	-0.3
2,364,195	+		ABZR87_RS11135	0.35	-2.4
2,364,195	+		ABZR87_RS11135	0.35	+0.5
2,364,227	+		ABZR87_RS11135	0.36	-0.5
2,364,227	+		ABZR87_RS11135	0.36	-2.2
2,364,276	-		ABZR87_RS11135	0.38	-1.0
2,364,557	+		ABZR87_RS11135	0.49	-0.9
2,364,557	+		ABZR87_RS11135	0.49	-1.0
2,364,557	+		ABZR87_RS11135	0.49	-0.0
2,365,145	+		ABZR87_RS11135	0.72	-1.7
2,365,146	-		ABZR87_RS11135	0.72	-0.6
2,365,146	-		ABZR87_RS11135	0.72	+0.6
2,365,146	-		ABZR87_RS11135	0.72	+2.1
2,365,146	-		ABZR87_RS11135	0.72	+1.7
2,365,146	-		ABZR87_RS11135	0.72	+2.2
2,365,146	-		ABZR87_RS11135	0.72	+0.1
2,365,205	+		ABZR87_RS11135	0.74	-0.7
2,365,502	+		ABZR87_RS11135	0.86	+0.6
2,365,503	-		ABZR87_RS11135	0.86	+0.7
2,365,503	-		ABZR87_RS11135	0.86	+0.4
2,365,503	-		ABZR87_RS11135	0.86	+1.1
2,365,742	+				+1.8
2,365,742	+				-0.0
2,365,742	+				-0.8
2,365,742	+				-1.5
2,365,742	+				+1.1
2,365,743	-				+2.0
2,365,865	+				+0.2
2,365,865	+				-1.3
2,365,865	+				+1.0
2,365,970	-		ABZR87_RS11140	0.51	-0.4
2,365,970	-		ABZR87_RS11140	0.51	-1.0
2,365,970	-		ABZR87_RS11140	0.51	-1.2
2,366,114	+				+0.5
2,366,114	+				-0.4
2,366,115	-				+2.0
2,366,115	-				+0.7
2,366,137	+				-0.4
2,366,137	+				-0.5
2,366,137	+				+0.7
2,366,137	+				-0.3
2,366,138	-				-1.2
2,366,138	-				-0.3
2,366,138	-				+1.1
2,366,322	+		ABZR87_RS11145	0.12	+1.1
2,366,323	-		ABZR87_RS11145	0.12	+0.2
2,366,397	+		ABZR87_RS11145	0.17	+0.3
2,366,397	+		ABZR87_RS11145	0.17	+0.9
2,366,397	+		ABZR87_RS11145	0.17	-1.5
2,366,397	+		ABZR87_RS11145	0.17	-1.3
2,366,397	+		ABZR87_RS11145	0.17	-0.2
2,366,397	+		ABZR87_RS11145	0.17	-0.5
2,366,398	-		ABZR87_RS11145	0.17	+0.3
2,366,398	-		ABZR87_RS11145	0.17	+1.8
2,366,398	-		ABZR87_RS11145	0.17	-2.1
2,366,398	-		ABZR87_RS11145	0.17	+1.0
2,366,400	+		ABZR87_RS11145	0.17	+1.5
2,366,400	+		ABZR87_RS11145	0.17	-0.3
2,366,400	+		ABZR87_RS11145	0.17	-1.3
2,366,400	+		ABZR87_RS11145	0.17	+0.1
2,366,400	+		ABZR87_RS11145	0.17	+0.8
2,366,400	+		ABZR87_RS11145	0.17	-0.7
2,366,401	-		ABZR87_RS11145	0.17	-1.7
2,366,401	-		ABZR87_RS11145	0.17	-1.6
2,366,401	-		ABZR87_RS11145	0.17	-0.0
2,366,516	+		ABZR87_RS11145	0.25	-1.2
2,366,516	+		ABZR87_RS11145	0.25	+0.0
2,366,516	+		ABZR87_RS11145	0.25	-1.1
2,366,516	+		ABZR87_RS11145	0.25	-0.9
2,366,516	+		ABZR87_RS11145	0.25	-0.3
2,366,516	+		ABZR87_RS11145	0.25	+3.1
2,366,517	-		ABZR87_RS11145	0.25	+1.1
2,366,587	-		ABZR87_RS11145	0.30	-1.8
2,366,587	-		ABZR87_RS11145	0.30	-1.4
2,366,637	+		ABZR87_RS11145	0.33	-1.3
2,366,637	+		ABZR87_RS11145	0.33	-0.5
2,366,638	-		ABZR87_RS11145	0.33	+0.6
2,366,638	-		ABZR87_RS11145	0.33	-0.6
2,366,664	+		ABZR87_RS11145	0.35	+0.3
2,366,664	+		ABZR87_RS11145	0.35	-2.1
2,366,664	+		ABZR87_RS11145	0.35	-0.1
2,366,665	-		ABZR87_RS11145	0.35	-0.3
2,366,665	-		ABZR87_RS11145	0.35	+0.4
2,366,665	-		ABZR87_RS11145	0.35	-0.5
2,366,665	-		ABZR87_RS11145	0.35	-1.7
2,366,691	-		ABZR87_RS11145	0.37	-1.2
2,366,691	-		ABZR87_RS11145	0.37	-1.5
2,366,734	-		ABZR87_RS11145	0.40	-2.5
2,366,742	+		ABZR87_RS11145	0.40	-2.0
2,366,743	-		ABZR87_RS11145	0.40	-0.7
2,366,832	+		ABZR87_RS11145	0.47	-2.7
2,366,833	-		ABZR87_RS11145	0.47	-0.1
2,366,833	-		ABZR87_RS11145	0.47	-1.9
2,366,833	-		ABZR87_RS11145	0.47	-1.9
2,366,833	-		ABZR87_RS11145	0.47	-1.3
2,366,833	-		ABZR87_RS11145	0.47	-0.3
2,366,835	+		ABZR87_RS11145	0.47	-1.3
2,366,835	+		ABZR87_RS11145	0.47	+0.7
2,366,835	+		ABZR87_RS11145	0.47	-0.1