Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10875

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
2,301,992	+				+0.1
2,301,993	-				+0.2
2,302,041	+				+0.1
2,302,041	+				-1.2
2,302,042	-				-0.7
2,302,042	-				-1.2
2,302,042	-				-0.1
2,302,042	-				+0.5
2,302,128	-		ABZR87_RS10870	0.10	+2.3
2,302,231	+		ABZR87_RS10870	0.22	+1.6
2,302,231	+		ABZR87_RS10870	0.22	+3.1
2,302,231	+		ABZR87_RS10870	0.22	+2.3
2,302,231	+		ABZR87_RS10870	0.22	+2.1
2,302,231	+		ABZR87_RS10870	0.22	+3.6
2,302,254	+		ABZR87_RS10870	0.25	+2.4
2,302,255	-		ABZR87_RS10870	0.25	+4.8
2,302,261	+		ABZR87_RS10870	0.26	+2.9
2,302,261	+		ABZR87_RS10870	0.26	+0.3
2,302,262	-		ABZR87_RS10870	0.26	+3.3
2,302,262	-		ABZR87_RS10870	0.26	+2.9
2,302,355	+		ABZR87_RS10870	0.37	+1.3
2,302,355	+		ABZR87_RS10870	0.37	+2.6
2,302,422	+		ABZR87_RS10870	0.46	+3.6
2,302,423	-		ABZR87_RS10870	0.46	+4.2
2,302,431	+		ABZR87_RS10870	0.47	+3.3
2,302,432	-		ABZR87_RS10870	0.47	+3.5
2,302,432	-		ABZR87_RS10870	0.47	+2.3
2,302,432	-		ABZR87_RS10870	0.47	+4.2
2,302,709	-		ABZR87_RS10870	0.80	+5.1
2,302,785	+		ABZR87_RS10870	0.89	+4.7
2,302,833	+				+5.5
2,302,855	+				+4.3
2,302,870	+				-0.2
2,302,870	+				+0.3
2,302,871	-				+0.9
2,302,942	+				+0.6
2,302,942	+				-0.1
2,302,942	+				-0.3
2,302,942	+				+1.0
2,302,943	-				-0.5
2,302,943	-				+0.9
2,302,943	-				+0.7
2,303,010	-		ABZR87_RS10875	0.11	+0.3
2,303,010	-		ABZR87_RS10875	0.11	+0.6
2,303,010	-		ABZR87_RS10875	0.11	+1.5
2,303,010	-		ABZR87_RS10875	0.11	+1.2
2,303,047	+		ABZR87_RS10875	0.15	+0.4
2,303,047	+		ABZR87_RS10875	0.15	+0.9
2,303,048	-		ABZR87_RS10875	0.15	+0.8
2,303,048	-		ABZR87_RS10875	0.15	-0.3
2,303,205	+		ABZR87_RS10875	0.28	+1.5
2,303,206	-		ABZR87_RS10875	0.29	-0.7
2,303,206	-		ABZR87_RS10875	0.29	+2.6
2,303,457	+		ABZR87_RS10875	0.51	+2.1
2,303,457	+		ABZR87_RS10875	0.51	+0.5
2,303,457	+		ABZR87_RS10875	0.51	+1.3
2,303,457	+		ABZR87_RS10875	0.51	+0.8
2,303,457	+		ABZR87_RS10875	0.51	+0.4
2,303,457	+		ABZR87_RS10875	0.51	+0.3
2,303,457	+		ABZR87_RS10875	0.51	+0.5
2,303,457	+		ABZR87_RS10875	0.51	+3.7
2,303,458	-		ABZR87_RS10875	0.51	-0.6
2,303,458	-		ABZR87_RS10875	0.51	+0.5
2,303,458	-		ABZR87_RS10875	0.51	-0.1
2,303,458	-		ABZR87_RS10875	0.51	+2.7
2,303,458	-		ABZR87_RS10875	0.51	+1.4
2,303,458	-		ABZR87_RS10875	0.51	+0.6
2,303,458	-		ABZR87_RS10875	0.51	+0.7
2,303,458	-		ABZR87_RS10875	0.51	+0.9
2,303,458	-		ABZR87_RS10875	0.51	+0.9
2,303,458	-		ABZR87_RS10875	0.51	+0.1
2,303,514	-		ABZR87_RS10875	0.56	+1.2
2,303,514	-		ABZR87_RS10875	0.56	+1.6
2,303,514	-		ABZR87_RS10875	0.56	+0.4
2,303,699	+		ABZR87_RS10875	0.72	+2.9
2,303,699	+		ABZR87_RS10875	0.72	+1.0
2,303,844	+		ABZR87_RS10875	0.85	+1.3
2,303,844	+		ABZR87_RS10875	0.85	+1.2
2,303,845	-		ABZR87_RS10875	0.85	+1.0
2,303,845	-		ABZR87_RS10875	0.85	+3.1
2,303,845	-		ABZR87_RS10875	0.85	+1.9
2,303,845	-		ABZR87_RS10875	0.85	+0.7
2,303,848	+		ABZR87_RS10875	0.85	+1.5
2,303,849	-		ABZR87_RS10875	0.85	+1.6
2,303,849	-		ABZR87_RS10875	0.85	+0.7
2,303,874	+		ABZR87_RS10875	0.87	+1.7
2,303,874	+		ABZR87_RS10875	0.87	+1.6
2,303,874	+		ABZR87_RS10875	0.87	+1.4
2,303,874	+		ABZR87_RS10875	0.87	+1.1
2,303,875	-		ABZR87_RS10875	0.87	+0.2
2,303,875	-		ABZR87_RS10875	0.87	+0.8
2,303,875	-		ABZR87_RS10875	0.87	+0.3
2,303,875	-		ABZR87_RS10875	0.87	+1.3
2,303,875	-		ABZR87_RS10875	0.87	+1.0
2,303,875	-		ABZR87_RS10875	0.87	+2.3
2,303,875	-		ABZR87_RS10875	0.87	+1.2
2,303,875	-		ABZR87_RS10875	0.87	+0.9
2,304,000	-				-0.2
2,304,016	-				+0.8
2,304,176	+		ABZR87_RS10880	0.14	-0.3
2,304,265	+		ABZR87_RS10880	0.24	+0.2
2,304,265	+		ABZR87_RS10880	0.24	+0.1
2,304,265	+		ABZR87_RS10880	0.24	+0.1
2,304,265	+		ABZR87_RS10880	0.24	+0.4
2,304,266	-		ABZR87_RS10880	0.24	-0.2
2,304,266	-		ABZR87_RS10880	0.24	+4.7
2,304,266	-		ABZR87_RS10880	0.24	-0.8
2,304,491	+		ABZR87_RS10880	0.50	-1.3
2,304,492	-		ABZR87_RS10880	0.51	-0.7
2,304,494	+		ABZR87_RS10880	0.51	+0.7
2,304,495	-		ABZR87_RS10880	0.51	+0.5
2,304,495	-		ABZR87_RS10880	0.51	-2.1
2,304,570	+		ABZR87_RS10880	0.60	-0.6
2,304,570	+		ABZR87_RS10880	0.60	+0.0
2,304,570	+		ABZR87_RS10880	0.60	-0.3
2,304,570	+		ABZR87_RS10880	0.60	-0.9
2,304,571	-		ABZR87_RS10880	0.60	-0.5
2,304,571	-		ABZR87_RS10880	0.60	-1.0
2,304,571	-		ABZR87_RS10880	0.60	+0.1
2,304,572	+		ABZR87_RS10880	0.60	+0.3
2,304,572	+		ABZR87_RS10880	0.60	-1.5
2,304,572	+		ABZR87_RS10880	0.60	-0.0
2,304,572	+		ABZR87_RS10880	0.60	+1.3
2,304,572	+		ABZR87_RS10880	0.60	+0.9
2,304,572	+		ABZR87_RS10880	0.60	-2.0
2,304,572	+		ABZR87_RS10880	0.60	-1.3
2,304,572	+		ABZR87_RS10880	0.60	-0.9
2,304,572	+		ABZR87_RS10880	0.60	-0.2
2,304,572	+		ABZR87_RS10880	0.60	-0.2
2,304,572	+		ABZR87_RS10880	0.60	+2.0
2,304,572	+		ABZR87_RS10880	0.60	-0.6
2,304,572	+		ABZR87_RS10880	0.60	+0.1
2,304,572	+		ABZR87_RS10880	0.60	-0.9
2,304,573	-		ABZR87_RS10880	0.60	-1.1
2,304,573	-		ABZR87_RS10880	0.60	+0.8
2,304,573	-		ABZR87_RS10880	0.60	+0.3
2,304,573	-		ABZR87_RS10880	0.60	-0.3
2,304,573	-		ABZR87_RS10880	0.60	+1.1
2,304,573	-		ABZR87_RS10880	0.60	+0.8
2,304,573	-		ABZR87_RS10880	0.60	-0.3
2,304,573	-		ABZR87_RS10880	0.60	-0.8
2,304,573	-		ABZR87_RS10880	0.60	-0.7
2,304,573	-		ABZR87_RS10880	0.60	-0.3
2,304,573	-		ABZR87_RS10880	0.60	-0.0
2,304,573	-		ABZR87_RS10880	0.60	+0.1
2,304,573	-		ABZR87_RS10880	0.60	-0.1
2,304,573	-		ABZR87_RS10880	0.60	+0.9
2,304,573	-		ABZR87_RS10880	0.60	+1.0
2,304,573	-		ABZR87_RS10880	0.60	+2.4
2,304,573	-		ABZR87_RS10880	0.60	+1.2
2,304,573	-		ABZR87_RS10880	0.60	-1.4
2,304,598	+		ABZR87_RS10880	0.63	-0.0
2,304,599	-		ABZR87_RS10880	0.63	-0.2
2,304,599	-		ABZR87_RS10880	0.63	+0.3
2,304,599	-		ABZR87_RS10880	0.63	-1.5
2,304,599	-		ABZR87_RS10880	0.63	-2.9
2,304,710	+		ABZR87_RS10880	0.76	-1.0
2,304,710	+		ABZR87_RS10880	0.76	+1.0
2,304,710	+		ABZR87_RS10880	0.76	+0.1
2,304,711	-		ABZR87_RS10880	0.76	-0.6
2,304,711	-		ABZR87_RS10880	0.76	-0.2
2,304,937	+				+2.1
2,304,937	+				+1.8
2,304,937	+				+0.4
2,304,937	+				-0.3
2,304,937	+				+0.8
2,304,937	+				-0.8
2,304,937	+				-0.6
2,304,937	+				+0.3
2,304,937	+				-1.6
2,304,938	-				-1.3
2,304,938	-				-1.1
2,304,938	-				-0.6
2,304,938	-				+0.7
2,304,938	-				+0.4
2,304,938	-				-0.3
2,304,994	+				-2.2
2,304,995	-				-1.5
2,304,995	-				-2.0
2,304,995	-				-0.2
2,304,995	-				-0.8