Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08750

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08745 and ABZR87_RS08750 are separated by 43 nucleotidesABZR87_RS08750 and ABZR87_RS08755 overlap by 1 nucleotides ABZR87_RS08745: ABZR87_RS08745 - phosphomannomutase/phosphoglucomutase, at 1,859,096 to 1,860,484 _RS08745 ABZR87_RS08750: ABZR87_RS08750 - lipopolysaccharide heptosyltransferase I, at 1,860,528 to 1,861,526 _RS08750 ABZR87_RS08755: ABZR87_RS08755 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 1,861,526 to 1,862,842 _RS08755 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1860.552 kb on - strandat 1860.596 kb on + strandat 1860.786 kb on + strand, within ABZR87_RS08750at 1860.787 kb on - strand, within ABZR87_RS08750at 1860.903 kb on + strand, within ABZR87_RS08750at 1860.903 kb on + strand, within ABZR87_RS08750at 1860.927 kb on + strand, within ABZR87_RS08750at 1860.927 kb on + strand, within ABZR87_RS08750at 1861.077 kb on + strand, within ABZR87_RS08750at 1861.077 kb on + strand, within ABZR87_RS08750at 1861.170 kb on + strand, within ABZR87_RS08750at 1861.170 kb on + strand, within ABZR87_RS08750at 1861.398 kb on + strand, within ABZR87_RS08750at 1861.398 kb on + strand, within ABZR87_RS08750at 1861.398 kb on + strand, within ABZR87_RS08750at 1861.431 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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1,860,552 - +4.3
1,860,596 + +5.8
1,860,786 + ABZR87_RS08750 0.26 +7.3
1,860,787 - ABZR87_RS08750 0.26 +1.8
1,860,903 + ABZR87_RS08750 0.38 +5.7
1,860,903 + ABZR87_RS08750 0.38 +5.8
1,860,927 + ABZR87_RS08750 0.40 +5.3
1,860,927 + ABZR87_RS08750 0.40 +5.5
1,861,077 + ABZR87_RS08750 0.55 +1.8
1,861,077 + ABZR87_RS08750 0.55 +1.8
1,861,170 + ABZR87_RS08750 0.64 +3.8
1,861,170 + ABZR87_RS08750 0.64 +4.5
1,861,398 + ABZR87_RS08750 0.87 +5.5
1,861,398 + ABZR87_RS08750 0.87 +5.9
1,861,398 + ABZR87_RS08750 0.87 +6.3
1,861,431 + +7.5

Or see this region's nucleotide sequence