Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07335 and ABZR87_RS07340 are separated by 16 nucleotides ABZR87_RS07340 and ABZR87_RS07345 are separated by 45 nucleotides ABZR87_RS07345 and ABZR87_RS07350 are separated by 1 nucleotides
ABZR87_RS07335: ABZR87_RS07335 - hypothetical protein, at 1,553,151 to 1,553,588
_RS07335
ABZR87_RS07340: ABZR87_RS07340 - C39 family peptidase, at 1,553,605 to 1,554,288
_RS07340
ABZR87_RS07345: ABZR87_RS07345 - hypothetical protein, at 1,554,334 to 1,554,879
_RS07345
ABZR87_RS07350: ABZR87_RS07350 - transporter, at 1,554,881 to 1,556,203
_RS07350
Position (kb)
1554
1555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1553.370 kb on + strand, within ABZR87_RS07335 at 1553.370 kb on + strand, within ABZR87_RS07335 at 1553.371 kb on - strand, within ABZR87_RS07335 at 1553.394 kb on + strand, within ABZR87_RS07335 at 1553.613 kb on + strand at 1553.613 kb on + strand at 1553.613 kb on + strand at 1553.613 kb on + strand at 1553.613 kb on + strand at 1553.614 kb on - strand at 1553.614 kb on - strand at 1553.614 kb on - strand at 1553.614 kb on - strand at 1553.614 kb on - strand at 1553.701 kb on + strand, within ABZR87_RS07340 at 1553.701 kb on + strand, within ABZR87_RS07340 at 1553.701 kb on + strand, within ABZR87_RS07340 at 1553.701 kb on + strand, within ABZR87_RS07340 at 1553.701 kb on + strand, within ABZR87_RS07340 at 1553.702 kb on - strand, within ABZR87_RS07340 at 1553.702 kb on - strand, within ABZR87_RS07340 at 1553.702 kb on - strand, within ABZR87_RS07340 at 1553.806 kb on + strand, within ABZR87_RS07340 at 1553.806 kb on + strand, within ABZR87_RS07340 at 1553.806 kb on + strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.807 kb on - strand, within ABZR87_RS07340 at 1553.812 kb on + strand, within ABZR87_RS07340 at 1553.812 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.854 kb on + strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1553.855 kb on - strand, within ABZR87_RS07340 at 1554.019 kb on + strand, within ABZR87_RS07340 at 1554.410 kb on - strand, within ABZR87_RS07345 at 1554.410 kb on - strand, within ABZR87_RS07345 at 1554.410 kb on - strand, within ABZR87_RS07345 at 1554.410 kb on - strand, within ABZR87_RS07345 at 1554.556 kb on + strand, within ABZR87_RS07345 at 1554.556 kb on + strand, within ABZR87_RS07345 at 1554.556 kb on + strand, within ABZR87_RS07345 at 1554.557 kb on - strand, within ABZR87_RS07345 at 1554.557 kb on - strand, within ABZR87_RS07345 at 1554.882 kb on + strand at 1554.991 kb on - strand at 1555.230 kb on + strand, within ABZR87_RS07350 at 1555.231 kb on - strand, within ABZR87_RS07350 at 1555.349 kb on - strand, within ABZR87_RS07350 at 1555.349 kb on - strand, within ABZR87_RS07350 at 1555.349 kb on - strand, within ABZR87_RS07350 at 1555.434 kb on + strand, within ABZR87_RS07350 at 1555.435 kb on - strand, within ABZR87_RS07350 at 1555.435 kb on - strand, within ABZR87_RS07350 at 1555.435 kb on - strand, within ABZR87_RS07350 at 1555.547 kb on + strand, within ABZR87_RS07350 at 1555.547 kb on + strand, within ABZR87_RS07350 at 1555.548 kb on - strand, within ABZR87_RS07350 at 1555.579 kb on - strand, within ABZR87_RS07350 at 1555.579 kb on - strand, within ABZR87_RS07350 at 1555.584 kb on + strand, within ABZR87_RS07350 at 1555.584 kb on + strand, within ABZR87_RS07350 at 1555.584 kb on + strand, within ABZR87_RS07350 at 1555.584 kb on + strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.585 kb on - strand, within ABZR87_RS07350 at 1555.713 kb on + strand, within ABZR87_RS07350 at 1555.714 kb on - strand, within ABZR87_RS07350 at 1555.714 kb on - strand, within ABZR87_RS07350 at 1555.714 kb on - strand, within ABZR87_RS07350 at 1555.746 kb on + strand, within ABZR87_RS07350 at 1555.746 kb on + strand, within ABZR87_RS07350 at 1555.746 kb on + strand, within ABZR87_RS07350 at 1555.747 kb on - strand, within ABZR87_RS07350
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 1,553,370 + ABZR87_RS07335 0.50 -0.8 1,553,370 + ABZR87_RS07335 0.50 +0.4 1,553,371 - ABZR87_RS07335 0.50 -0.5 1,553,394 + ABZR87_RS07335 0.55 -1.3 1,553,613 + +0.8 1,553,613 + +0.3 1,553,613 + -0.9 1,553,613 + -0.0 1,553,613 + -2.2 1,553,614 - +0.7 1,553,614 - +0.1 1,553,614 - +0.1 1,553,614 - +1.1 1,553,614 - -0.5 1,553,701 + ABZR87_RS07340 0.14 -0.0 1,553,701 + ABZR87_RS07340 0.14 +0.4 1,553,701 + ABZR87_RS07340 0.14 -0.2 1,553,701 + ABZR87_RS07340 0.14 -1.7 1,553,701 + ABZR87_RS07340 0.14 -1.4 1,553,702 - ABZR87_RS07340 0.14 -1.2 1,553,702 - ABZR87_RS07340 0.14 -0.8 1,553,702 - ABZR87_RS07340 0.14 -0.0 1,553,806 + ABZR87_RS07340 0.29 +0.1 1,553,806 + ABZR87_RS07340 0.29 +1.0 1,553,806 + ABZR87_RS07340 0.29 -0.2 1,553,807 - ABZR87_RS07340 0.30 -1.7 1,553,807 - ABZR87_RS07340 0.30 +1.5 1,553,807 - ABZR87_RS07340 0.30 -1.9 1,553,807 - ABZR87_RS07340 0.30 +1.0 1,553,807 - ABZR87_RS07340 0.30 -0.2 1,553,807 - ABZR87_RS07340 0.30 -1.3 1,553,812 + ABZR87_RS07340 0.30 +1.4 1,553,812 + ABZR87_RS07340 0.30 -0.4 1,553,854 + ABZR87_RS07340 0.36 +1.2 1,553,854 + ABZR87_RS07340 0.36 +0.7 1,553,854 + ABZR87_RS07340 0.36 -0.7 1,553,854 + ABZR87_RS07340 0.36 -1.5 1,553,854 + ABZR87_RS07340 0.36 -0.9 1,553,854 + ABZR87_RS07340 0.36 -0.1 1,553,855 - ABZR87_RS07340 0.37 +0.8 1,553,855 - ABZR87_RS07340 0.37 +0.8 1,553,855 - ABZR87_RS07340 0.37 +1.6 1,553,855 - ABZR87_RS07340 0.37 -0.3 1,553,855 - ABZR87_RS07340 0.37 -0.9 1,553,855 - ABZR87_RS07340 0.37 -0.4 1,553,855 - ABZR87_RS07340 0.37 +0.3 1,554,019 + ABZR87_RS07340 0.61 -0.4 1,554,410 - ABZR87_RS07345 0.14 -0.5 1,554,410 - ABZR87_RS07345 0.14 -1.5 1,554,410 - ABZR87_RS07345 0.14 -1.3 1,554,410 - ABZR87_RS07345 0.14 -0.5 1,554,556 + ABZR87_RS07345 0.41 -2.1 1,554,556 + ABZR87_RS07345 0.41 -1.4 1,554,556 + ABZR87_RS07345 0.41 -1.2 1,554,557 - ABZR87_RS07345 0.41 +0.3 1,554,557 - ABZR87_RS07345 0.41 -0.7 1,554,882 + +0.5 1,554,991 - -0.6 1,555,230 + ABZR87_RS07350 0.26 -1.4 1,555,231 - ABZR87_RS07350 0.26 -1.2 1,555,349 - ABZR87_RS07350 0.35 -1.5 1,555,349 - ABZR87_RS07350 0.35 -1.7 1,555,349 - ABZR87_RS07350 0.35 -0.3 1,555,434 + ABZR87_RS07350 0.42 -1.3 1,555,435 - ABZR87_RS07350 0.42 -0.5 1,555,435 - ABZR87_RS07350 0.42 -1.7 1,555,435 - ABZR87_RS07350 0.42 +0.8 1,555,547 + ABZR87_RS07350 0.50 +0.6 1,555,547 + ABZR87_RS07350 0.50 +0.1 1,555,548 - ABZR87_RS07350 0.50 +0.9 1,555,579 - ABZR87_RS07350 0.53 +0.6 1,555,579 - ABZR87_RS07350 0.53 +1.5 1,555,584 + ABZR87_RS07350 0.53 -1.8 1,555,584 + ABZR87_RS07350 0.53 -0.6 1,555,584 + ABZR87_RS07350 0.53 -0.9 1,555,584 + ABZR87_RS07350 0.53 +0.8 1,555,585 - ABZR87_RS07350 0.53 +0.6 1,555,585 - ABZR87_RS07350 0.53 +2.1 1,555,585 - ABZR87_RS07350 0.53 -0.6 1,555,585 - ABZR87_RS07350 0.53 -0.8 1,555,585 - ABZR87_RS07350 0.53 +0.2 1,555,585 - ABZR87_RS07350 0.53 -0.0 1,555,585 - ABZR87_RS07350 0.53 +1.9 1,555,713 + ABZR87_RS07350 0.63 -2.0 1,555,714 - ABZR87_RS07350 0.63 +0.9 1,555,714 - ABZR87_RS07350 0.63 +0.6 1,555,714 - ABZR87_RS07350 0.63 +0.5 1,555,746 + ABZR87_RS07350 0.65 -0.8 1,555,746 + ABZR87_RS07350 0.65 +1.0 1,555,746 + ABZR87_RS07350 0.65 +2.1 1,555,747 - ABZR87_RS07350 0.65 -1.6
Or see this region's nucleotide sequence