Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07180

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
1,517,483	+		ABZR87_RS07175	0.25	-2.4
1,517,483	+		ABZR87_RS07175	0.25	-0.4
1,517,483	+		ABZR87_RS07175	0.25	-0.6
1,517,484	-		ABZR87_RS07175	0.25	-1.1
1,517,484	-		ABZR87_RS07175	0.25	-0.3
1,517,562	-		ABZR87_RS07175	0.31	+1.0
1,517,582	+		ABZR87_RS07175	0.33	+0.0
1,517,583	-		ABZR87_RS07175	0.33	+0.3
1,517,583	-		ABZR87_RS07175	0.33	+0.6
1,517,583	-		ABZR87_RS07175	0.33	-0.4
1,517,701	+		ABZR87_RS07175	0.42	-0.9
1,517,701	+		ABZR87_RS07175	0.42	-0.1
1,517,702	-		ABZR87_RS07175	0.42	+1.0
1,517,752	+		ABZR87_RS07175	0.46	-0.4
1,517,753	+		ABZR87_RS07175	0.46	-1.0
1,517,753	+		ABZR87_RS07175	0.46	-2.7
1,517,753	+		ABZR87_RS07175	0.46	-0.0
1,517,753	+		ABZR87_RS07175	0.46	+0.1
1,517,753	+		ABZR87_RS07175	0.46	-1.5
1,517,753	+		ABZR87_RS07175	0.46	+0.6
1,517,753	+		ABZR87_RS07175	0.46	-0.4
1,517,753	+		ABZR87_RS07175	0.46	-2.4
1,517,753	+		ABZR87_RS07175	0.46	+0.6
1,517,753	+		ABZR87_RS07175	0.46	+1.0
1,517,753	+		ABZR87_RS07175	0.46	-1.9
1,517,753	+		ABZR87_RS07175	0.46	-0.8
1,517,753	+		ABZR87_RS07175	0.46	+0.1
1,517,754	-		ABZR87_RS07175	0.46	-1.1
1,517,754	-		ABZR87_RS07175	0.46	+1.4
1,517,754	-		ABZR87_RS07175	0.46	+0.4
1,517,754	-		ABZR87_RS07175	0.46	-1.1
1,517,754	-		ABZR87_RS07175	0.46	+0.7
1,517,754	-		ABZR87_RS07175	0.46	+0.7
1,517,754	-		ABZR87_RS07175	0.46	-0.8
1,517,933	+		ABZR87_RS07175	0.60	+0.9
1,517,934	-		ABZR87_RS07175	0.60	-0.5
1,517,937	+		ABZR87_RS07175	0.61	+0.7
1,517,937	+		ABZR87_RS07175	0.61	-1.7
1,517,937	+		ABZR87_RS07175	0.61	-1.0
1,517,937	+		ABZR87_RS07175	0.61	-1.0
1,517,937	+		ABZR87_RS07175	0.61	+0.8
1,517,937	+		ABZR87_RS07175	0.61	+1.9
1,517,938	-		ABZR87_RS07175	0.61	+0.1
1,517,938	-		ABZR87_RS07175	0.61	-1.6
1,517,938	-		ABZR87_RS07175	0.61	-0.6
1,518,031	+		ABZR87_RS07175	0.68	-1.2
1,518,032	-		ABZR87_RS07175	0.68	+1.1
1,518,032	-		ABZR87_RS07175	0.68	-2.1
1,518,032	-		ABZR87_RS07175	0.68	-0.2
1,518,042	+		ABZR87_RS07175	0.69	+0.9
1,518,210	+		ABZR87_RS07175	0.82	-1.7
1,518,211	-		ABZR87_RS07175	0.82	+0.1
1,518,223	+		ABZR87_RS07175	0.83	-0.8
1,518,223	+		ABZR87_RS07175	0.83	+0.6
1,518,223	+		ABZR87_RS07175	0.83	+1.2
1,518,224	-		ABZR87_RS07175	0.83	-1.0
1,518,224	-		ABZR87_RS07175	0.83	-0.6
1,518,224	-		ABZR87_RS07175	0.83	+0.0
1,518,224	-		ABZR87_RS07175	0.83	-0.5
1,518,224	-		ABZR87_RS07175	0.83	-1.0
1,518,224	-		ABZR87_RS07175	0.83	-0.3
1,518,363	+				-0.3
1,518,364	-				+0.4
1,518,419	+				-1.2
1,518,419	+				-1.1
1,518,420	-				-0.2
1,518,420	-				-0.8
1,518,420	-				-0.9
1,518,420	-				-0.9
1,518,420	-				-1.1
1,518,420	-				+1.2
1,518,484	+				-1.7
1,518,484	+				-0.7
1,518,484	+				+0.1
1,518,485	-				-0.3
1,518,485	-				-0.9
1,518,571	+		ABZR87_RS07180	0.18	-0.1
1,518,572	-		ABZR87_RS07180	0.18	+0.4
1,518,638	+		ABZR87_RS07180	0.27	+0.2
1,518,638	+		ABZR87_RS07180	0.27	-0.3
1,518,638	+		ABZR87_RS07180	0.27	+0.6
1,518,638	+		ABZR87_RS07180	0.27	+0.5
1,518,638	+		ABZR87_RS07180	0.27	-1.1
1,518,639	-		ABZR87_RS07180	0.27	+1.5
1,518,683	+		ABZR87_RS07180	0.33	+1.0
1,518,736	+		ABZR87_RS07180	0.40	+1.2
1,518,737	-		ABZR87_RS07180	0.40	+0.7
1,518,737	-		ABZR87_RS07180	0.40	-2.1
1,518,737	-		ABZR87_RS07180	0.40	+0.9
1,518,801	-		ABZR87_RS07180	0.49	-1.8
1,518,831	-		ABZR87_RS07180	0.53	-1.4
1,518,859	+		ABZR87_RS07180	0.57	-0.5
1,518,859	+		ABZR87_RS07180	0.57	-0.9
1,518,859	+		ABZR87_RS07180	0.57	-1.5
1,518,859	+		ABZR87_RS07180	0.57	+0.6
1,518,859	+		ABZR87_RS07180	0.57	-0.3
1,518,859	+		ABZR87_RS07180	0.57	+0.4
1,518,859	+		ABZR87_RS07180	0.57	+2.1
1,518,859	+		ABZR87_RS07180	0.57	+0.7
1,518,859	+		ABZR87_RS07180	0.57	+0.6
1,518,859	+		ABZR87_RS07180	0.57	+0.9
1,518,859	+		ABZR87_RS07180	0.57	+0.0
1,518,860	-		ABZR87_RS07180	0.57	-2.3
1,518,860	-		ABZR87_RS07180	0.57	-0.2
1,518,860	-		ABZR87_RS07180	0.57	-0.2
1,518,860	-		ABZR87_RS07180	0.57	+2.1
1,518,860	-		ABZR87_RS07180	0.57	-0.0
1,518,979	+		ABZR87_RS07180	0.73	+0.9
1,518,980	-		ABZR87_RS07180	0.73	+1.6
1,518,980	-		ABZR87_RS07180	0.73	+0.6
1,519,148	+				-0.6
1,519,156	+				+0.4
1,519,156	+				+1.0
1,519,156	+				-0.8
1,519,156	+				-1.8
1,519,156	+				-1.3
1,519,156	+				+0.6
1,519,156	+				+0.2
1,519,157	-				-0.4
1,519,157	-				+1.1
1,519,157	-				+0.9
1,519,157	-				-0.1
1,519,226	+				+0.1
1,519,226	+				+0.3
1,519,226	+				-1.0
1,519,227	-				+1.5
1,519,227	-				+0.6
1,519,227	-				+0.3
1,519,227	-				+1.0
1,519,227	-				-0.4
1,519,259	+				-0.7
1,519,259	+				+0.4
1,519,259	+				+0.1
1,519,259	+				-1.0
1,519,260	-				+2.1
1,519,266	+				-0.2
1,519,266	+				-0.8
1,519,266	+				-0.6
1,519,266	+				-0.6
1,519,266	+				-0.9
1,519,266	+				-1.1
1,519,267	-				-0.8
1,519,267	-				+0.0
1,519,267	-				-0.2
1,519,267	-				-2.1
1,519,267	-				+0.3
1,519,267	-				-0.6
1,519,398	+				-0.7
1,519,399	-				-0.2
1,519,399	-				-0.2
1,519,399	-				+0.5
1,519,434	+		ABZR87_RS07185	0.12	-1.4
1,519,434	+		ABZR87_RS07185	0.12	-1.7
1,519,480	+		ABZR87_RS07185	0.15	-2.0
1,519,481	-		ABZR87_RS07185	0.15	-0.7
1,519,500	+		ABZR87_RS07185	0.17	-0.5
1,519,500	+		ABZR87_RS07185	0.17	-1.0
1,519,500	+		ABZR87_RS07185	0.17	-1.9
1,519,526	+		ABZR87_RS07185	0.18	+1.7
1,519,527	-		ABZR87_RS07185	0.18	+1.8
1,519,539	+		ABZR87_RS07185	0.19	+0.9
1,519,591	+		ABZR87_RS07185	0.23	-0.4
1,519,591	+		ABZR87_RS07185	0.23	-0.1
1,519,592	-		ABZR87_RS07185	0.23	-0.1
1,519,592	-		ABZR87_RS07185	0.23	-0.7
1,519,592	-		ABZR87_RS07185	0.23	+0.6
1,519,605	+		ABZR87_RS07185	0.24	-2.1
1,519,605	+		ABZR87_RS07185	0.24	+2.4
1,519,605	+		ABZR87_RS07185	0.24	+0.3
1,519,606	-		ABZR87_RS07185	0.24	+0.7
1,519,606	-		ABZR87_RS07185	0.24	+0.4
1,519,606	-		ABZR87_RS07185	0.24	-0.1
1,519,606	-		ABZR87_RS07185	0.24	+0.9
1,519,615	+		ABZR87_RS07185	0.24	-1.2
1,519,616	-		ABZR87_RS07185	0.25	+0.2
1,519,643	+		ABZR87_RS07185	0.26	+0.3
1,519,644	-		ABZR87_RS07185	0.27	-0.2
1,519,666	-		ABZR87_RS07185	0.28	-0.9
1,519,770	+		ABZR87_RS07185	0.35	+0.7
1,519,770	+		ABZR87_RS07185	0.35	+0.2
1,519,770	+		ABZR87_RS07185	0.35	+0.6
1,519,770	+		ABZR87_RS07185	0.35	-0.0
1,519,770	+		ABZR87_RS07185	0.35	+1.2
1,519,770	+		ABZR87_RS07185	0.35	-0.7
1,519,770	+		ABZR87_RS07185	0.35	-0.6
1,519,770	+		ABZR87_RS07185	0.35	-1.1
1,519,771	-		ABZR87_RS07185	0.35	-0.5
1,519,771	-		ABZR87_RS07185	0.35	-1.8
1,519,771	-		ABZR87_RS07185	0.35	-2.6
1,519,784	-		ABZR87_RS07185	0.36	+1.6
1,519,889	+		ABZR87_RS07185	0.43	+1.4
1,519,889	+		ABZR87_RS07185	0.43	-1.0
1,519,889	+		ABZR87_RS07185	0.43	-1.4
1,519,889	+		ABZR87_RS07185	0.43	+0.4
1,519,945	+		ABZR87_RS07185	0.47	-2.3
1,519,946	-		ABZR87_RS07185	0.47	-1.1
1,519,946	-		ABZR87_RS07185	0.47	-0.1
1,519,946	-		ABZR87_RS07185	0.47	-0.1
1,519,946	-		ABZR87_RS07185	0.47	+0.0
1,519,946	-		ABZR87_RS07185	0.47	+0.9
1,519,946	-		ABZR87_RS07185	0.47	-0.1
1,520,105	+		ABZR87_RS07185	0.58	+2.7
1,520,105	+		ABZR87_RS07185	0.58	-2.0
1,520,105	+		ABZR87_RS07185	0.58	+1.6
1,520,105	+		ABZR87_RS07185	0.58	-1.9
1,520,106	-		ABZR87_RS07185	0.58	+0.5
1,520,106	-		ABZR87_RS07185	0.58	-2.5
1,520,162	+		ABZR87_RS07185	0.62	-0.6
1,520,162	+		ABZR87_RS07185	0.62	-0.4
1,520,163	-		ABZR87_RS07185	0.62	+0.2