Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06910

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06900 and ABZR87_RS06905 are separated by 219 nucleotidesABZR87_RS06905 and ABZR87_RS06910 are separated by 88 nucleotidesABZR87_RS06910 and ABZR87_RS06915 are separated by 146 nucleotidesABZR87_RS06915 and ABZR87_RS06920 are separated by 26 nucleotides ABZR87_RS06900: ABZR87_RS06900 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,460,901 to 1,462,181 _RS06900 ABZR87_RS06905: ABZR87_RS06905 - hypothetical protein, at 1,462,401 to 1,462,664 _RS06905 ABZR87_RS06910: ABZR87_RS06910 - ANTAR domain-containing protein, at 1,462,753 to 1,463,379 _RS06910 ABZR87_RS06915: ABZR87_RS06915 - fumarylacetoacetate hydrolase family protein, at 1,463,526 to 1,464,227 _RS06915 ABZR87_RS06920: ABZR87_RS06920 - maleylacetoacetate isomerase, at 1,464,254 to 1,464,898 _RS06920 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -2 -1 0 1 2at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.841 kb on + strand, within ABZR87_RS06900at 1461.841 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1462.321 kb on + strandat 1462.322 kb on - strandat 1462.425 kb on + strandat 1462.425 kb on + strandat 1462.425 kb on + strandat 1462.426 kb on - strandat 1462.509 kb on + strand, within ABZR87_RS06905at 1462.510 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.635 kb on + strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.028 kb on - strand, within ABZR87_RS06910at 1463.028 kb on - strand, within ABZR87_RS06910at 1463.442 kb on + strandat 1463.442 kb on + strandat 1463.442 kb on + strandat 1463.442 kb on + strandat 1463.442 kb on + strandat 1463.508 kb on + strandat 1463.508 kb on + strandat 1463.509 kb on - strandat 1463.509 kb on - strandat 1463.610 kb on + strand, within ABZR87_RS06915at 1463.611 kb on - strand, within ABZR87_RS06915at 1463.611 kb on - strand, within ABZR87_RS06915at 1463.628 kb on + strand, within ABZR87_RS06915at 1463.628 kb on + strand, within ABZR87_RS06915at 1463.628 kb on + strand, within ABZR87_RS06915at 1463.629 kb on - strand, within ABZR87_RS06915at 1463.629 kb on - strand, within ABZR87_RS06915at 1463.629 kb on - strand, within ABZR87_RS06915at 1463.712 kb on + strand, within ABZR87_RS06915at 1463.713 kb on - strand, within ABZR87_RS06915at 1463.713 kb on - strand, within ABZR87_RS06915at 1463.713 kb on - strand, within ABZR87_RS06915at 1463.745 kb on + strand, within ABZR87_RS06915at 1463.746 kb on - strand, within ABZR87_RS06915at 1463.773 kb on - strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.843 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.847 kb on + strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1463.848 kb on - strand, within ABZR87_RS06915at 1464.087 kb on + strand, within ABZR87_RS06915at 1464.087 kb on + strand, within ABZR87_RS06915at 1464.087 kb on + strand, within ABZR87_RS06915at 1464.087 kb on + strand, within ABZR87_RS06915at 1464.087 kb on + strand, within ABZR87_RS06915at 1464.088 kb on - strand, within ABZR87_RS06915at 1464.088 kb on - strand, within ABZR87_RS06915at 1464.088 kb on - strand, within ABZR87_RS06915at 1464.129 kb on + strand, within ABZR87_RS06915at 1464.130 kb on - strand, within ABZR87_RS06915at 1464.130 kb on - strand, within ABZR87_RS06915at 1464.130 kb on - strand, within ABZR87_RS06915at 1464.269 kb on + strandat 1464.269 kb on + strandat 1464.269 kb on + strandat 1464.270 kb on - strandat 1464.270 kb on - strandat 1464.270 kb on - strandat 1464.270 kb on - strandat 1464.275 kb on + strandat 1464.275 kb on + strandat 1464.276 kb on - strandat 1464.276 kb on - strandat 1464.335 kb on + strand, within ABZR87_RS06920at 1464.341 kb on + strand, within ABZR87_RS06920

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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1,461,829 + ABZR87_RS06900 0.72 +0.3
1,461,829 + ABZR87_RS06900 0.72 -0.7
1,461,829 + ABZR87_RS06900 0.72 +0.6
1,461,829 + ABZR87_RS06900 0.72 +1.0
1,461,830 - ABZR87_RS06900 0.73 -0.5
1,461,830 - ABZR87_RS06900 0.73 +0.4
1,461,830 - ABZR87_RS06900 0.73 -0.7
1,461,830 - ABZR87_RS06900 0.73 -1.0
1,461,841 + ABZR87_RS06900 0.73 -1.0
1,461,841 + ABZR87_RS06900 0.73 +0.2
1,461,934 + ABZR87_RS06900 0.81 +0.6
1,461,934 + ABZR87_RS06900 0.81 -0.2
1,461,934 + ABZR87_RS06900 0.81 +0.8
1,461,934 + ABZR87_RS06900 0.81 -0.5
1,462,321 + -0.5
1,462,322 - +0.4
1,462,425 + -0.2
1,462,425 + +1.2
1,462,425 + +2.5
1,462,426 - +0.5
1,462,509 + ABZR87_RS06905 0.41 -1.0
1,462,510 - ABZR87_RS06905 0.41 -1.2
1,462,552 - ABZR87_RS06905 0.57 -1.6
1,462,552 - ABZR87_RS06905 0.57 +0.1
1,462,552 - ABZR87_RS06905 0.57 -0.4
1,462,552 - ABZR87_RS06905 0.57 -2.0
1,462,635 + ABZR87_RS06905 0.89 +0.6
1,462,636 - ABZR87_RS06905 0.89 +2.5
1,462,636 - ABZR87_RS06905 0.89 -0.8
1,462,636 - ABZR87_RS06905 0.89 +0.8
1,462,636 - ABZR87_RS06905 0.89 -0.2
1,462,974 - ABZR87_RS06910 0.35 -0.9
1,462,974 - ABZR87_RS06910 0.35 +0.7
1,462,974 - ABZR87_RS06910 0.35 -0.3
1,462,974 - ABZR87_RS06910 0.35 -0.9
1,463,027 + ABZR87_RS06910 0.44 -1.2
1,463,027 + ABZR87_RS06910 0.44 +1.3
1,463,027 + ABZR87_RS06910 0.44 -2.2
1,463,028 - ABZR87_RS06910 0.44 -0.9
1,463,028 - ABZR87_RS06910 0.44 +1.5
1,463,442 + -0.4
1,463,442 + -0.0
1,463,442 + +1.8
1,463,442 + +0.0
1,463,442 + -1.6
1,463,508 + -0.3
1,463,508 + +1.8
1,463,509 - -1.6
1,463,509 - +0.1
1,463,610 + ABZR87_RS06915 0.12 +2.5
1,463,611 - ABZR87_RS06915 0.12 +0.5
1,463,611 - ABZR87_RS06915 0.12 -0.6
1,463,628 + ABZR87_RS06915 0.15 +0.6
1,463,628 + ABZR87_RS06915 0.15 +0.9
1,463,628 + ABZR87_RS06915 0.15 +1.5
1,463,629 - ABZR87_RS06915 0.15 +0.4
1,463,629 - ABZR87_RS06915 0.15 -0.7
1,463,629 - ABZR87_RS06915 0.15 +0.4
1,463,712 + ABZR87_RS06915 0.26 +1.7
1,463,713 - ABZR87_RS06915 0.27 +1.2
1,463,713 - ABZR87_RS06915 0.27 -0.1
1,463,713 - ABZR87_RS06915 0.27 +0.2
1,463,745 + ABZR87_RS06915 0.31 +0.1
1,463,746 - ABZR87_RS06915 0.31 +0.7
1,463,773 - ABZR87_RS06915 0.35 +2.2
1,463,843 + ABZR87_RS06915 0.45 -1.1
1,463,843 + ABZR87_RS06915 0.45 -2.7
1,463,843 + ABZR87_RS06915 0.45 -0.2
1,463,843 + ABZR87_RS06915 0.45 -1.6
1,463,843 + ABZR87_RS06915 0.45 -0.8
1,463,843 + ABZR87_RS06915 0.45 +0.1
1,463,847 + ABZR87_RS06915 0.46 -0.4
1,463,847 + ABZR87_RS06915 0.46 +1.1
1,463,847 + ABZR87_RS06915 0.46 +0.6
1,463,847 + ABZR87_RS06915 0.46 +1.1
1,463,847 + ABZR87_RS06915 0.46 +0.1
1,463,847 + ABZR87_RS06915 0.46 -0.2
1,463,847 + ABZR87_RS06915 0.46 +0.9
1,463,848 - ABZR87_RS06915 0.46 -0.1
1,463,848 - ABZR87_RS06915 0.46 -0.9
1,463,848 - ABZR87_RS06915 0.46 -0.0
1,463,848 - ABZR87_RS06915 0.46 +0.8
1,463,848 - ABZR87_RS06915 0.46 +1.7
1,463,848 - ABZR87_RS06915 0.46 -0.3
1,463,848 - ABZR87_RS06915 0.46 +1.0
1,463,848 - ABZR87_RS06915 0.46 -0.8
1,464,087 + ABZR87_RS06915 0.80 +1.7
1,464,087 + ABZR87_RS06915 0.80 +0.3
1,464,087 + ABZR87_RS06915 0.80 -0.5
1,464,087 + ABZR87_RS06915 0.80 -0.9
1,464,087 + ABZR87_RS06915 0.80 -1.1
1,464,088 - ABZR87_RS06915 0.80 -1.4
1,464,088 - ABZR87_RS06915 0.80 +1.9
1,464,088 - ABZR87_RS06915 0.80 -1.8
1,464,129 + ABZR87_RS06915 0.86 +0.3
1,464,130 - ABZR87_RS06915 0.86 +0.2
1,464,130 - ABZR87_RS06915 0.86 +0.3
1,464,130 - ABZR87_RS06915 0.86 -0.5
1,464,269 + +0.5
1,464,269 + +0.9
1,464,269 + +0.8
1,464,270 - +0.9
1,464,270 - -0.1
1,464,270 - -0.6
1,464,270 - +0.4
1,464,275 + +1.8
1,464,275 + -1.1
1,464,276 - +0.8
1,464,276 - +0.4
1,464,335 + ABZR87_RS06920 0.13 +0.6
1,464,341 + ABZR87_RS06920 0.13 -1.2

Or see this region's nucleotide sequence