Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06435

Experiment: rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 3; outgrowth in LB
1,370,055	+		ABZR87_RS06425	0.74	-1.3
1,370,055	+		ABZR87_RS06425	0.74	-0.7
1,370,055	+		ABZR87_RS06425	0.74	-0.2
1,370,055	+		ABZR87_RS06425	0.74	-0.2
1,370,055	+		ABZR87_RS06425	0.74	+0.5
1,370,055	+		ABZR87_RS06425	0.74	+0.1
1,370,055	+		ABZR87_RS06425	0.74	+1.0
1,370,055	+		ABZR87_RS06425	0.74	+0.1
1,370,055	+		ABZR87_RS06425	0.74	+0.5
1,370,055	+		ABZR87_RS06425	0.74	-1.2
1,370,055	+		ABZR87_RS06425	0.74	-1.6
1,370,056	-		ABZR87_RS06425	0.74	+0.2
1,370,056	-		ABZR87_RS06425	0.74	-0.3
1,370,056	-		ABZR87_RS06425	0.74	+0.7
1,370,056	-		ABZR87_RS06425	0.74	-1.2
1,370,056	-		ABZR87_RS06425	0.74	-1.4
1,370,056	-		ABZR87_RS06425	0.74	-0.2
1,370,056	-		ABZR87_RS06425	0.74	-0.7
1,370,154	+				-0.5
1,370,154	+				+0.5
1,370,154	+				-0.1
1,370,155	-				+1.0
1,370,155	-				-0.1
1,370,155	-				+0.0
1,370,155	-				+0.6
1,370,155	-				-1.2
1,370,155	-				+0.0
1,370,155	-				+1.4
1,370,161	+				+0.1
1,370,161	+				-0.2
1,370,161	+				-0.2
1,370,161	+				+0.2
1,370,161	+				+1.2
1,370,161	+				-0.5
1,370,161	+				-1.8
1,370,161	+				+0.0
1,370,161	+				-2.0
1,370,162	-				-0.3
1,370,162	-				+0.3
1,370,162	-				+0.4
1,370,162	-				-1.0
1,370,162	-				-2.8
1,370,165	+				-0.2
1,370,166	-				+0.2
1,370,166	-				-0.9
1,370,176	+				-1.8
1,370,296	+		ABZR87_RS06430	0.10	+0.1
1,370,296	+		ABZR87_RS06430	0.10	+0.5
1,370,296	+		ABZR87_RS06430	0.10	+0.5
1,370,297	-		ABZR87_RS06430	0.11	-2.1
1,370,297	-		ABZR87_RS06430	0.11	-0.6
1,370,297	-		ABZR87_RS06430	0.11	-0.7
1,370,297	-		ABZR87_RS06430	0.11	-0.3
1,370,297	-		ABZR87_RS06430	0.11	-0.9
1,370,297	-		ABZR87_RS06430	0.11	-0.0
1,370,297	-		ABZR87_RS06430	0.11	+0.5
1,370,297	-		ABZR87_RS06430	0.11	+0.7
1,370,297	-		ABZR87_RS06430	0.11	+0.4
1,370,297	-		ABZR87_RS06430	0.11	+0.1
1,370,441	+		ABZR87_RS06430	0.67	-2.0
1,370,476	+		ABZR87_RS06430	0.80	-0.2
1,370,476	+		ABZR87_RS06430	0.80	+0.3
1,370,498	+		ABZR87_RS06430	0.89	-0.8
1,370,498	+		ABZR87_RS06430	0.89	-0.9
1,370,498	+		ABZR87_RS06430	0.89	-0.8
1,370,498	+		ABZR87_RS06430	0.89	+1.5
1,370,498	+		ABZR87_RS06430	0.89	-2.5
1,370,498	+		ABZR87_RS06430	0.89	-2.3
1,370,498	+		ABZR87_RS06430	0.89	-0.1
1,370,498	+		ABZR87_RS06430	0.89	+1.5
1,370,498	+		ABZR87_RS06430	0.89	+1.3
1,370,499	-		ABZR87_RS06430	0.89	-1.3
1,370,499	-		ABZR87_RS06430	0.89	+0.9
1,370,499	-		ABZR87_RS06430	0.89	+1.7
1,370,499	-		ABZR87_RS06430	0.89	+1.4
1,370,499	-		ABZR87_RS06430	0.89	+0.3
1,370,499	-		ABZR87_RS06430	0.89	-1.2
1,370,499	-		ABZR87_RS06430	0.89	+0.5
1,370,499	-		ABZR87_RS06430	0.89	-2.7
1,370,499	-		ABZR87_RS06430	0.89	+1.3
1,370,499	-		ABZR87_RS06430	0.89	+1.8
1,370,499	-		ABZR87_RS06430	0.89	-0.3
1,370,499	-		ABZR87_RS06430	0.89	-0.5
1,370,513	+				-0.5
1,370,513	+				+0.2
1,370,513	+				+0.6
1,370,513	+				-2.1
1,370,513	+				+0.7
1,370,513	+				+0.9
1,370,513	+				+0.1
1,370,513	+				-0.9
1,370,514	-				-2.6
1,370,514	-				+0.7
1,370,574	+				-1.0
1,370,575	-				+0.2
1,370,575	-				+0.7
1,370,575	-				-0.5
1,370,575	-				-0.8
1,370,589	+				+0.5
1,370,590	-				-0.3
1,370,590	-				-1.1
1,370,590	-				+1.5
1,370,590	-				+0.8
1,370,732	+				+0.4
1,370,732	+				-0.6
1,370,733	-				-0.9
1,370,733	-				+0.5
1,370,825	+				+0.4
1,370,825	+				-1.0
1,370,825	+				+1.6
1,370,826	-				-1.1
1,370,826	-				+0.4
1,370,963	-		ABZR87_RS06435	0.14	+0.2
1,371,008	+		ABZR87_RS06435	0.19	-1.6
1,371,008	+		ABZR87_RS06435	0.19	+0.9
1,371,117	+		ABZR87_RS06435	0.32	-0.9
1,371,133	+		ABZR87_RS06435	0.34	-2.1
1,371,134	-		ABZR87_RS06435	0.34	-0.3
1,371,298	-		ABZR87_RS06435	0.54	-0.7
1,371,298	-		ABZR87_RS06435	0.54	-0.3
1,371,298	-		ABZR87_RS06435	0.54	-1.4
1,371,298	-		ABZR87_RS06435	0.54	-1.7
1,371,298	-		ABZR87_RS06435	0.54	-0.7
1,371,298	-		ABZR87_RS06435	0.54	-1.6
1,371,314	+		ABZR87_RS06435	0.56	-1.3
1,371,314	+		ABZR87_RS06435	0.56	-2.3
1,371,314	+		ABZR87_RS06435	0.56	+1.5
1,371,314	+		ABZR87_RS06435	0.56	-1.2
1,371,314	+		ABZR87_RS06435	0.56	+1.6
1,371,314	+		ABZR87_RS06435	0.56	+0.3
1,371,314	+		ABZR87_RS06435	0.56	-1.1
1,371,315	-		ABZR87_RS06435	0.56	-0.2
1,371,315	-		ABZR87_RS06435	0.56	-0.5
1,371,315	-		ABZR87_RS06435	0.56	-0.2
1,371,315	-		ABZR87_RS06435	0.56	-1.1
1,371,462	+		ABZR87_RS06435	0.73	-0.8
1,371,462	+		ABZR87_RS06435	0.73	+1.5
1,371,463	-		ABZR87_RS06435	0.73	-0.5
1,371,507	+		ABZR87_RS06435	0.79	-1.3
1,371,507	+		ABZR87_RS06435	0.79	+1.2
1,371,557	+		ABZR87_RS06435	0.85	-0.0
1,371,557	+		ABZR87_RS06435	0.85	+2.0
1,371,557	+		ABZR87_RS06435	0.85	+1.7
1,371,557	+		ABZR87_RS06435	0.85	-2.8
1,371,557	+		ABZR87_RS06435	0.85	+1.1
1,371,557	+		ABZR87_RS06435	0.85	-1.0
1,371,558	-		ABZR87_RS06435	0.85	-2.5
1,371,558	-		ABZR87_RS06435	0.85	-0.9
1,371,558	-		ABZR87_RS06435	0.85	+0.4
1,371,639	+				+1.0
1,371,709	+				+1.5
1,371,709	+				+0.5
1,371,709	+				-1.2
1,371,710	-				+2.2
1,371,710	-				+1.0
1,371,710	-				-2.2
1,371,710	-				+0.1
1,371,757	-				-1.1
1,371,757	-				-1.3
1,371,831	+		ABZR87_RS06440	0.13	-0.0
1,371,831	+		ABZR87_RS06440	0.13	+2.1
1,371,831	+		ABZR87_RS06440	0.13	-0.3
1,371,832	-		ABZR87_RS06440	0.13	-0.3
1,371,832	-		ABZR87_RS06440	0.13	+1.1
1,371,832	-		ABZR87_RS06440	0.13	-0.8
1,371,832	-		ABZR87_RS06440	0.13	+1.1
1,372,117	+		ABZR87_RS06440	0.40	-1.4
1,372,118	-		ABZR87_RS06440	0.40	-0.3
1,372,118	-		ABZR87_RS06440	0.40	+1.4
1,372,145	+		ABZR87_RS06440	0.42	-0.6
1,372,146	-		ABZR87_RS06440	0.42	+2.3
1,372,165	+		ABZR87_RS06440	0.44	-0.3
1,372,186	+		ABZR87_RS06440	0.46	+1.2
1,372,186	+		ABZR87_RS06440	0.46	+1.5
1,372,186	+		ABZR87_RS06440	0.46	+0.8
1,372,187	-		ABZR87_RS06440	0.46	+1.7
1,372,264	+		ABZR87_RS06440	0.53	+0.8
1,372,265	-		ABZR87_RS06440	0.53	-0.1
1,372,265	-		ABZR87_RS06440	0.53	-1.4
1,372,324	+		ABZR87_RS06440	0.59	-0.0
1,372,324	+		ABZR87_RS06440	0.59	-1.4
1,372,324	+		ABZR87_RS06440	0.59	+0.9
1,372,324	+		ABZR87_RS06440	0.59	-0.8
1,372,324	+		ABZR87_RS06440	0.59	+0.9
1,372,324	+		ABZR87_RS06440	0.59	-0.1
1,372,324	+		ABZR87_RS06440	0.59	-0.6
1,372,324	+		ABZR87_RS06440	0.59	+0.2
1,372,325	-		ABZR87_RS06440	0.59	-0.0
1,372,325	-		ABZR87_RS06440	0.59	+0.7
1,372,325	-		ABZR87_RS06440	0.59	-0.7
1,372,325	-		ABZR87_RS06440	0.59	+1.3
1,372,325	-		ABZR87_RS06440	0.59	-0.3
1,372,325	-		ABZR87_RS06440	0.59	-1.4
1,372,325	-		ABZR87_RS06440	0.59	+3.1
1,372,325	-		ABZR87_RS06440	0.59	+0.9
1,372,333	+		ABZR87_RS06440	0.59	+2.1
1,372,334	-		ABZR87_RS06440	0.60	-1.4
1,372,334	-		ABZR87_RS06440	0.60	+0.2