Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05925

Experiment: rhizosphere sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05920 and ABZR87_RS05925 are separated by 1 nucleotidesABZR87_RS05925 and ABZR87_RS05930 are separated by 56 nucleotides ABZR87_RS05920: ABZR87_RS05920 - zinc-binding alcohol dehydrogenase family protein, at 1,265,931 to 1,266,944 _RS05920 ABZR87_RS05925: ABZR87_RS05925 - LysR family transcriptional regulator, at 1,266,946 to 1,267,860 _RS05925 ABZR87_RS05930: ABZR87_RS05930 - RNA repair transcriptional activator RtcR, at 1,267,917 to 1,269,515 _RS05930 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.947 kb on - strandat 1265.949 kb on + strandat 1265.950 kb on - strandat 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.224 kb on + strand, within ABZR87_RS05920at 1266.224 kb on + strand, within ABZR87_RS05920at 1266.225 kb on - strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.589 kb on - strand, within ABZR87_RS05920at 1266.589 kb on - strand, within ABZR87_RS05920at 1266.741 kb on + strand, within ABZR87_RS05920at 1266.741 kb on + strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.743 kb on - strand, within ABZR87_RS05920at 1266.962 kb on + strandat 1266.962 kb on + strandat 1266.963 kb on - strandat 1267.133 kb on + strand, within ABZR87_RS05925at 1267.133 kb on + strand, within ABZR87_RS05925at 1267.133 kb on + strand, within ABZR87_RS05925at 1267.134 kb on - strand, within ABZR87_RS05925at 1267.134 kb on - strand, within ABZR87_RS05925at 1267.134 kb on - strand, within ABZR87_RS05925at 1267.427 kb on + strand, within ABZR87_RS05925at 1267.667 kb on + strand, within ABZR87_RS05925at 1267.787 kb on - strandat 1267.787 kb on - strandat 1267.907 kb on + strandat 1267.907 kb on + strandat 1267.907 kb on + strandat 1267.907 kb on + strandat 1267.908 kb on - strandat 1267.908 kb on - strandat 1267.919 kb on - strandat 1267.963 kb on + strandat 1267.963 kb on + strandat 1268.326 kb on + strand, within ABZR87_RS05930at 1268.327 kb on - strand, within ABZR87_RS05930at 1268.327 kb on - strand, within ABZR87_RS05930at 1268.327 kb on - strand, within ABZR87_RS05930at 1268.327 kb on - strand, within ABZR87_RS05930at 1268.394 kb on + strand, within ABZR87_RS05930at 1268.473 kb on + strand, within ABZR87_RS05930at 1268.473 kb on + strand, within ABZR87_RS05930at 1268.473 kb on + strand, within ABZR87_RS05930at 1268.473 kb on + strand, within ABZR87_RS05930at 1268.474 kb on - strand, within ABZR87_RS05930at 1268.474 kb on - strand, within ABZR87_RS05930at 1268.474 kb on - strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.475 kb on + strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.476 kb on - strand, within ABZR87_RS05930at 1268.830 kb on + strand, within ABZR87_RS05930at 1268.830 kb on + strand, within ABZR87_RS05930at 1268.831 kb on - strand, within ABZR87_RS05930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
remove
1,265,946 + -0.7
1,265,946 + -0.3
1,265,946 + -0.2
1,265,946 + -1.1
1,265,947 - -1.0
1,265,949 + -0.8
1,265,950 - -0.7
1,266,196 - ABZR87_RS05920 0.26 -0.6
1,266,196 - ABZR87_RS05920 0.26 -1.6
1,266,196 - ABZR87_RS05920 0.26 -0.1
1,266,196 - ABZR87_RS05920 0.26 -1.5
1,266,196 - ABZR87_RS05920 0.26 -0.5
1,266,224 + ABZR87_RS05920 0.29 -1.2
1,266,224 + ABZR87_RS05920 0.29 -0.3
1,266,225 - ABZR87_RS05920 0.29 +0.8
1,266,430 + ABZR87_RS05920 0.49 -0.8
1,266,430 + ABZR87_RS05920 0.49 +0.3
1,266,430 + ABZR87_RS05920 0.49 -0.5
1,266,430 + ABZR87_RS05920 0.49 +0.7
1,266,431 - ABZR87_RS05920 0.49 +1.0
1,266,431 - ABZR87_RS05920 0.49 +1.8
1,266,431 - ABZR87_RS05920 0.49 +0.1
1,266,431 - ABZR87_RS05920 0.49 -1.8
1,266,431 - ABZR87_RS05920 0.49 -0.5
1,266,588 + ABZR87_RS05920 0.65 +1.1
1,266,588 + ABZR87_RS05920 0.65 -0.6
1,266,588 + ABZR87_RS05920 0.65 +2.0
1,266,588 + ABZR87_RS05920 0.65 +0.2
1,266,589 - ABZR87_RS05920 0.65 +0.5
1,266,589 - ABZR87_RS05920 0.65 +0.0
1,266,741 + ABZR87_RS05920 0.80 +0.9
1,266,741 + ABZR87_RS05920 0.80 +0.7
1,266,742 - ABZR87_RS05920 0.80 +1.1
1,266,742 - ABZR87_RS05920 0.80 +0.5
1,266,742 - ABZR87_RS05920 0.80 -1.1
1,266,742 - ABZR87_RS05920 0.80 -2.8
1,266,742 - ABZR87_RS05920 0.80 +0.8
1,266,742 - ABZR87_RS05920 0.80 -0.5
1,266,743 - ABZR87_RS05920 0.80 -1.3
1,266,962 + +1.6
1,266,962 + +1.7
1,266,963 - +0.4
1,267,133 + ABZR87_RS05925 0.20 -1.0
1,267,133 + ABZR87_RS05925 0.20 -2.7
1,267,133 + ABZR87_RS05925 0.20 +0.9
1,267,134 - ABZR87_RS05925 0.21 -1.8
1,267,134 - ABZR87_RS05925 0.21 -1.4
1,267,134 - ABZR87_RS05925 0.21 -1.1
1,267,427 + ABZR87_RS05925 0.53 +0.3
1,267,667 + ABZR87_RS05925 0.79 -0.6
1,267,787 - -2.1
1,267,787 - -0.0
1,267,907 + -1.8
1,267,907 + -0.1
1,267,907 + -0.1
1,267,907 + -0.1
1,267,908 - -1.2
1,267,908 - -2.6
1,267,919 - -2.6
1,267,963 + +1.6
1,267,963 + -0.2
1,268,326 + ABZR87_RS05930 0.26 -0.3
1,268,327 - ABZR87_RS05930 0.26 +0.8
1,268,327 - ABZR87_RS05930 0.26 -1.1
1,268,327 - ABZR87_RS05930 0.26 +0.1
1,268,327 - ABZR87_RS05930 0.26 +1.6
1,268,394 + ABZR87_RS05930 0.30 +0.6
1,268,473 + ABZR87_RS05930 0.35 -0.4
1,268,473 + ABZR87_RS05930 0.35 -0.2
1,268,473 + ABZR87_RS05930 0.35 -1.2
1,268,473 + ABZR87_RS05930 0.35 -1.5
1,268,474 - ABZR87_RS05930 0.35 -0.8
1,268,474 - ABZR87_RS05930 0.35 -2.2
1,268,474 - ABZR87_RS05930 0.35 +0.5
1,268,475 + ABZR87_RS05930 0.35 +0.3
1,268,475 + ABZR87_RS05930 0.35 -1.0
1,268,475 + ABZR87_RS05930 0.35 -0.1
1,268,475 + ABZR87_RS05930 0.35 +0.7
1,268,475 + ABZR87_RS05930 0.35 +0.1
1,268,475 + ABZR87_RS05930 0.35 -0.4
1,268,475 + ABZR87_RS05930 0.35 -0.6
1,268,475 + ABZR87_RS05930 0.35 +2.0
1,268,476 - ABZR87_RS05930 0.35 -1.6
1,268,476 - ABZR87_RS05930 0.35 -0.1
1,268,476 - ABZR87_RS05930 0.35 +0.2
1,268,476 - ABZR87_RS05930 0.35 -0.5
1,268,476 - ABZR87_RS05930 0.35 +0.9
1,268,476 - ABZR87_RS05930 0.35 +0.5
1,268,476 - ABZR87_RS05930 0.35 +1.9
1,268,476 - ABZR87_RS05930 0.35 -1.1
1,268,476 - ABZR87_RS05930 0.35 -1.2
1,268,830 + ABZR87_RS05930 0.57 +0.4
1,268,830 + ABZR87_RS05930 0.57 -0.2
1,268,831 - ABZR87_RS05930 0.57 +1.7

Or see this region's nucleotide sequence