Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05920 and ABZR87_RS05925 are separated by 1 nucleotides ABZR87_RS05925 and ABZR87_RS05930 are separated by 56 nucleotides
ABZR87_RS05920: ABZR87_RS05920 - zinc-binding alcohol dehydrogenase family protein, at 1,265,931 to 1,266,944
_RS05920
ABZR87_RS05925: ABZR87_RS05925 - LysR family transcriptional regulator, at 1,266,946 to 1,267,860
_RS05925
ABZR87_RS05930: ABZR87_RS05930 - RNA repair transcriptional activator RtcR, at 1,267,917 to 1,269,515
_RS05930
Position (kb)
1266
1267
1268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1265.946 kb on + strand at 1265.946 kb on + strand at 1265.946 kb on + strand at 1265.946 kb on + strand at 1265.947 kb on - strand at 1265.949 kb on + strand at 1265.950 kb on - strand at 1266.196 kb on - strand, within ABZR87_RS05920 at 1266.196 kb on - strand, within ABZR87_RS05920 at 1266.196 kb on - strand, within ABZR87_RS05920 at 1266.196 kb on - strand, within ABZR87_RS05920 at 1266.196 kb on - strand, within ABZR87_RS05920 at 1266.224 kb on + strand, within ABZR87_RS05920 at 1266.224 kb on + strand, within ABZR87_RS05920 at 1266.225 kb on - strand, within ABZR87_RS05920 at 1266.430 kb on + strand, within ABZR87_RS05920 at 1266.430 kb on + strand, within ABZR87_RS05920 at 1266.430 kb on + strand, within ABZR87_RS05920 at 1266.430 kb on + strand, within ABZR87_RS05920 at 1266.431 kb on - strand, within ABZR87_RS05920 at 1266.431 kb on - strand, within ABZR87_RS05920 at 1266.431 kb on - strand, within ABZR87_RS05920 at 1266.431 kb on - strand, within ABZR87_RS05920 at 1266.431 kb on - strand, within ABZR87_RS05920 at 1266.588 kb on + strand, within ABZR87_RS05920 at 1266.588 kb on + strand, within ABZR87_RS05920 at 1266.588 kb on + strand, within ABZR87_RS05920 at 1266.588 kb on + strand, within ABZR87_RS05920 at 1266.589 kb on - strand, within ABZR87_RS05920 at 1266.589 kb on - strand, within ABZR87_RS05920 at 1266.741 kb on + strand, within ABZR87_RS05920 at 1266.741 kb on + strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.742 kb on - strand, within ABZR87_RS05920 at 1266.743 kb on - strand, within ABZR87_RS05920 at 1266.962 kb on + strand at 1266.962 kb on + strand at 1266.963 kb on - strand at 1267.133 kb on + strand, within ABZR87_RS05925 at 1267.133 kb on + strand, within ABZR87_RS05925 at 1267.133 kb on + strand, within ABZR87_RS05925 at 1267.134 kb on - strand, within ABZR87_RS05925 at 1267.134 kb on - strand, within ABZR87_RS05925 at 1267.134 kb on - strand, within ABZR87_RS05925 at 1267.427 kb on + strand, within ABZR87_RS05925 at 1267.667 kb on + strand, within ABZR87_RS05925 at 1267.787 kb on - strand at 1267.787 kb on - strand at 1267.907 kb on + strand at 1267.907 kb on + strand at 1267.907 kb on + strand at 1267.907 kb on + strand at 1267.908 kb on - strand at 1267.908 kb on - strand at 1267.919 kb on - strand at 1267.963 kb on + strand at 1267.963 kb on + strand at 1268.326 kb on + strand, within ABZR87_RS05930 at 1268.327 kb on - strand, within ABZR87_RS05930 at 1268.327 kb on - strand, within ABZR87_RS05930 at 1268.327 kb on - strand, within ABZR87_RS05930 at 1268.327 kb on - strand, within ABZR87_RS05930 at 1268.394 kb on + strand, within ABZR87_RS05930 at 1268.473 kb on + strand, within ABZR87_RS05930 at 1268.473 kb on + strand, within ABZR87_RS05930 at 1268.473 kb on + strand, within ABZR87_RS05930 at 1268.473 kb on + strand, within ABZR87_RS05930 at 1268.474 kb on - strand, within ABZR87_RS05930 at 1268.474 kb on - strand, within ABZR87_RS05930 at 1268.474 kb on - strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.475 kb on + strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.476 kb on - strand, within ABZR87_RS05930 at 1268.830 kb on + strand, within ABZR87_RS05930 at 1268.830 kb on + strand, within ABZR87_RS05930 at 1268.831 kb on - strand, within ABZR87_RS05930
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 1,265,946 + -0.7 1,265,946 + -0.3 1,265,946 + -0.2 1,265,946 + -1.1 1,265,947 - -1.0 1,265,949 + -0.8 1,265,950 - -0.7 1,266,196 - ABZR87_RS05920 0.26 -0.6 1,266,196 - ABZR87_RS05920 0.26 -1.6 1,266,196 - ABZR87_RS05920 0.26 -0.1 1,266,196 - ABZR87_RS05920 0.26 -1.5 1,266,196 - ABZR87_RS05920 0.26 -0.5 1,266,224 + ABZR87_RS05920 0.29 -1.2 1,266,224 + ABZR87_RS05920 0.29 -0.3 1,266,225 - ABZR87_RS05920 0.29 +0.8 1,266,430 + ABZR87_RS05920 0.49 -0.8 1,266,430 + ABZR87_RS05920 0.49 +0.3 1,266,430 + ABZR87_RS05920 0.49 -0.5 1,266,430 + ABZR87_RS05920 0.49 +0.7 1,266,431 - ABZR87_RS05920 0.49 +1.0 1,266,431 - ABZR87_RS05920 0.49 +1.8 1,266,431 - ABZR87_RS05920 0.49 +0.1 1,266,431 - ABZR87_RS05920 0.49 -1.8 1,266,431 - ABZR87_RS05920 0.49 -0.5 1,266,588 + ABZR87_RS05920 0.65 +1.1 1,266,588 + ABZR87_RS05920 0.65 -0.6 1,266,588 + ABZR87_RS05920 0.65 +2.0 1,266,588 + ABZR87_RS05920 0.65 +0.2 1,266,589 - ABZR87_RS05920 0.65 +0.5 1,266,589 - ABZR87_RS05920 0.65 +0.0 1,266,741 + ABZR87_RS05920 0.80 +0.9 1,266,741 + ABZR87_RS05920 0.80 +0.7 1,266,742 - ABZR87_RS05920 0.80 +1.1 1,266,742 - ABZR87_RS05920 0.80 +0.5 1,266,742 - ABZR87_RS05920 0.80 -1.1 1,266,742 - ABZR87_RS05920 0.80 -2.8 1,266,742 - ABZR87_RS05920 0.80 +0.8 1,266,742 - ABZR87_RS05920 0.80 -0.5 1,266,743 - ABZR87_RS05920 0.80 -1.3 1,266,962 + +1.6 1,266,962 + +1.7 1,266,963 - +0.4 1,267,133 + ABZR87_RS05925 0.20 -1.0 1,267,133 + ABZR87_RS05925 0.20 -2.7 1,267,133 + ABZR87_RS05925 0.20 +0.9 1,267,134 - ABZR87_RS05925 0.21 -1.8 1,267,134 - ABZR87_RS05925 0.21 -1.4 1,267,134 - ABZR87_RS05925 0.21 -1.1 1,267,427 + ABZR87_RS05925 0.53 +0.3 1,267,667 + ABZR87_RS05925 0.79 -0.6 1,267,787 - -2.1 1,267,787 - -0.0 1,267,907 + -1.8 1,267,907 + -0.1 1,267,907 + -0.1 1,267,907 + -0.1 1,267,908 - -1.2 1,267,908 - -2.6 1,267,919 - -2.6 1,267,963 + +1.6 1,267,963 + -0.2 1,268,326 + ABZR87_RS05930 0.26 -0.3 1,268,327 - ABZR87_RS05930 0.26 +0.8 1,268,327 - ABZR87_RS05930 0.26 -1.1 1,268,327 - ABZR87_RS05930 0.26 +0.1 1,268,327 - ABZR87_RS05930 0.26 +1.6 1,268,394 + ABZR87_RS05930 0.30 +0.6 1,268,473 + ABZR87_RS05930 0.35 -0.4 1,268,473 + ABZR87_RS05930 0.35 -0.2 1,268,473 + ABZR87_RS05930 0.35 -1.2 1,268,473 + ABZR87_RS05930 0.35 -1.5 1,268,474 - ABZR87_RS05930 0.35 -0.8 1,268,474 - ABZR87_RS05930 0.35 -2.2 1,268,474 - ABZR87_RS05930 0.35 +0.5 1,268,475 + ABZR87_RS05930 0.35 +0.3 1,268,475 + ABZR87_RS05930 0.35 -1.0 1,268,475 + ABZR87_RS05930 0.35 -0.1 1,268,475 + ABZR87_RS05930 0.35 +0.7 1,268,475 + ABZR87_RS05930 0.35 +0.1 1,268,475 + ABZR87_RS05930 0.35 -0.4 1,268,475 + ABZR87_RS05930 0.35 -0.6 1,268,475 + ABZR87_RS05930 0.35 +2.0 1,268,476 - ABZR87_RS05930 0.35 -1.6 1,268,476 - ABZR87_RS05930 0.35 -0.1 1,268,476 - ABZR87_RS05930 0.35 +0.2 1,268,476 - ABZR87_RS05930 0.35 -0.5 1,268,476 - ABZR87_RS05930 0.35 +0.9 1,268,476 - ABZR87_RS05930 0.35 +0.5 1,268,476 - ABZR87_RS05930 0.35 +1.9 1,268,476 - ABZR87_RS05930 0.35 -1.1 1,268,476 - ABZR87_RS05930 0.35 -1.2 1,268,830 + ABZR87_RS05930 0.57 +0.4 1,268,830 + ABZR87_RS05930 0.57 -0.2 1,268,831 - ABZR87_RS05930 0.57 +1.7
Or see this region's nucleotide sequence