Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04680 and ABZR87_RS04685 are separated by 96 nucleotides ABZR87_RS04685 and ABZR87_RS04690 are separated by 373 nucleotides ABZR87_RS04690 and ABZR87_RS04695 are separated by 71 nucleotides ABZR87_RS04695 and ABZR87_RS04700 are separated by 73 nucleotides
ABZR87_RS04680: ABZR87_RS04680 - nickel/cobalt efflux protein RcnA, at 977,594 to 978,721
_RS04680
ABZR87_RS04685: ABZR87_RS04685 - metal/formaldehyde-sensitive transcriptional repressor, at 978,818 to 979,090
_RS04685
ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327
_RS04690
ABZR87_RS04695: ABZR87_RS04695 - hypothetical protein, at 980,399 to 980,788
_RS04695
ABZR87_RS04700: ABZR87_RS04700 - FAD-binding oxidoreductase, at 980,862 to 982,181
_RS04700
Position (kb) 979
980
981 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.754 kb on + strand at 978.769 kb on + strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.838 kb on + strand at 978.839 kb on - strand at 979.095 kb on - strand at 979.130 kb on + strand at 979.307 kb on - strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.511 kb on - strand at 979.598 kb on + strand, within ABZR87_RS04690 at 979.710 kb on + strand, within ABZR87_RS04690 at 979.722 kb on + strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.920 kb on + strand, within ABZR87_RS04690 at 979.921 kb on - strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.199 kb on + strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.400 kb on + strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.443 kb on + strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.712 kb on + strand, within ABZR87_RS04695 at 980.713 kb on - strand, within ABZR87_RS04695 at 980.827 kb on - strand at 980.890 kb on + strand at 980.890 kb on + strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 981.137 kb on - strand, within ABZR87_RS04700 at 981.137 kb on - strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 978,495 + ABZR87_RS04680 0.80 +0.2 978,495 + ABZR87_RS04680 0.80 +0.9 978,495 + ABZR87_RS04680 0.80 -0.9 978,495 + ABZR87_RS04680 0.80 +1.1 978,495 + ABZR87_RS04680 0.80 -1.0 978,533 - ABZR87_RS04680 0.83 +0.1 978,533 - ABZR87_RS04680 0.83 -2.5 978,754 + +0.4 978,769 + -0.1 978,770 - -0.7 978,770 - -0.4 978,770 - +0.3 978,826 + +1.0 978,826 + +0.6 978,826 + +4.1 978,827 - +3.1 978,827 - -0.9 978,827 - +0.4 978,838 + +1.2 978,839 - -1.6 979,095 - +1.2 979,130 + +1.0 979,307 - -0.4 979,510 + +1.4 979,510 + -0.4 979,510 + +0.3 979,511 - +0.2 979,598 + ABZR87_RS04690 0.16 +2.5 979,710 + ABZR87_RS04690 0.28 +0.4 979,722 + ABZR87_RS04690 0.30 -0.2 979,723 - ABZR87_RS04690 0.30 +1.2 979,723 - ABZR87_RS04690 0.30 +0.7 979,723 - ABZR87_RS04690 0.30 -0.4 979,723 - ABZR87_RS04690 0.30 -1.7 979,814 + ABZR87_RS04690 0.41 +1.0 979,814 + ABZR87_RS04690 0.41 -0.6 979,814 + ABZR87_RS04690 0.41 -0.8 979,814 + ABZR87_RS04690 0.41 -0.1 979,815 - ABZR87_RS04690 0.41 +0.0 979,815 - ABZR87_RS04690 0.41 +0.3 979,815 - ABZR87_RS04690 0.41 +0.5 979,920 + ABZR87_RS04690 0.53 +0.5 979,921 - ABZR87_RS04690 0.53 -1.6 980,151 + ABZR87_RS04690 0.80 +0.5 980,151 + ABZR87_RS04690 0.80 +1.4 980,151 + ABZR87_RS04690 0.80 +0.5 980,152 - ABZR87_RS04690 0.80 +0.6 980,152 - ABZR87_RS04690 0.80 -1.4 980,199 + ABZR87_RS04690 0.85 +1.0 980,200 - ABZR87_RS04690 0.85 -0.1 980,200 - ABZR87_RS04690 0.85 +0.0 980,400 + -0.7 980,401 - -2.4 980,401 - -1.0 980,401 - -0.0 980,443 + ABZR87_RS04695 0.11 -1.1 980,444 - ABZR87_RS04695 0.12 +1.4 980,444 - ABZR87_RS04695 0.12 -1.4 980,712 + ABZR87_RS04695 0.80 -1.0 980,713 - ABZR87_RS04695 0.81 -0.1 980,827 - -0.3 980,890 + -0.8 980,890 + +1.7 980,891 - +0.4 980,891 - -1.7 980,891 - -0.3 980,891 - -0.8 980,891 - -0.9 980,914 + +0.4 980,914 + -1.0 980,914 + -1.5 980,914 + -1.0 980,914 + -1.3 980,914 + +1.5 980,914 + -0.9 980,915 - -0.8 980,915 - -2.2 980,915 - -2.5 980,915 - +1.4 980,915 - +0.0 980,915 - -0.8 981,137 - ABZR87_RS04700 0.21 -0.4 981,137 - ABZR87_RS04700 0.21 +0.8 981,277 + ABZR87_RS04700 0.31 +0.3 981,277 + ABZR87_RS04700 0.31 -1.8
Or see this region's nucleotide sequence